SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54970

Length: 395 nt

UniGene Fasta

>uagpf_v2_unigene54970
CGTCGTGACCTTGGCTGTCACTCGTGTCCTTGGCGTAGTCATGGGATGGGGGCAGCAGCAGTGTTTGAACGTAGCGGTGCTGTAGATCAGCTTTGCAATGCTCGGCCAATCAAGGATCATACCTCGCTGTCGAAAGATGCACAATAGCCAACTGTGTTTTTTCTCTTCAAAATTTTCCATTTTATTAGAATTATTTCATGCGTTCTCGGTACTTTTATTGCCATAGTCTCTAGCTTCTGGCTTGTTTGAGGTTTTAGCTTTTGACATTTTGCATATCCTGGTTAAGGCAAAGCATAAATTATCTATGTTTTTACAATATCTCATCCACACTGGCTTAATTATTGTGAGCTATGATCTTATACGCTATTGTTCCTGCAAAGGATTTAGTAATAAAT

Ace file of the UniGene uagpf_v2_unigene54970

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene16552	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	acetyl-CoA C-acyltransferase (EC 2.3.1.16) precursor - cucurbit dbj\|BAA11117.1\| 3-ketoacyl-CoA thiolase [Cucurbita cv. Kurokawa Amakuri]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	3-ketoacyl- thiolase	-	-	90%

Source	ECs	Term	Type	e value	Identity
Blast2go	Acetyl-CoA C-acyltransferase.	EC:2.3.1.16	-	0.0	90%

Source	KEGGs	Term	Identity
Blast2go	Fatty acid elongation in mitochondria	00062	90%
Blast2go	Fatty acid metabolism	00071	90%
Blast2go	Valine, leucine and isoleucine degradation	00280	90%
Blast2go	Geraniol degradation	00281	90%
Blast2go	Benzoate degradation	00362	90%
Blast2go	alpha-Linolenic acid metabolism	00592	90%
Blast2go	Ethylbenzene degradation	00642	90%
Blast2go	Biosynthesis of unsaturated fatty acids	01040	90%
Blast2go	Biosynthesis of plant hormones	01070	90%
Blast2go	Metabolic pathways	01100	90%
Blast2go	Biosynthesis of secondary metabolites	01110	90%

Source	GOs	Term	Type	Identity
Blast2go	positive regulation of abscisic acid mediated signaling pathway	GO:0009789	Biological Process	90%
Blast2go	fatty acid metabolic process	GO:0006631	Biological Process	90%
Blast2go	glyoxysome organization	GO:0010111	Biological Process	90%
Blast2go	acetyl-CoA C-acyltransferase activity	GO:0003988	Molecular Function	90%
Blast2go	peroxisome	GO:0005777	Cellular Component	90%
Blast2go	mitochondrion	GO:0005739	Cellular Component	90%
Blast2go	nucleolus	GO:0005730	Cellular Component	90%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	90%
Blast2go	chloroplast	GO:0009507	Cellular Component	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thiolase	IPR002155	-	0.0	-
Sma3	Thiolase-like, subgroup	IPR016038	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NYA1

Fln msg: atg_distance in limit (1-15): atg_distance = 6, your sequence is shorter than subject: 34 - 53

Fln protein: MGAAAVFERSGAVDQLCNARPIKDHTSLSKDAQ*

Protein Length: 35

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGTCCTTGGCGTAGTCATGGG_-_ATGGGGGCAGCAGCAGTGTTTGAACGTAGCGGTGCTGTAGATCAGCTTTGCAATGCTCGGCCAATCAAGGATCATACCTCGCTGTCGAAAGATGCACAATAG___CCAACTGTGTTTTTTCTCTTCAAAATTTTCCATTTTATTAGAATTATTTCATGCGTTCTCGGTACTTTTATTGCCATAGTCTCTAGCTTCTGGCTTGTTTGAGGTTTTAGCTTTTGACATTTTGCATATCCTGGTTAAGGCAAAGCATAAATTATCTATGTTTTTACAATATCTCATCCACACTGGCTTAATTATTGTGAGCTATGATCTTATACGCTATTGTTCCTGCAAAGGATTTAGTAATAAAT

Fln Alignment:

uagpf_mira_rep_c88767___GMGAAAVFERSGAVDQLCNARPIKDHTSLSKDAQ
A9NYA1________________GMGAAAVFERGSAVDQLCNARPIKDHTSLSKDAQ

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
46	66		33		0.997461
50			66	33	0.997467
53		33		66	0.997461
54		33	66		0.997476
55			66	33	0.997476
56			66	33	0.997467

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain