SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54932

Length: 374 nt

UniGene Fasta

>uagpf_v2_unigene54932
CGTCGTGACCTTGGCTGTCACTCTGCTACCAAGTTCATCTCCAAGATTGTAGATCGGGAAATTATTGTGAGGGATGCAAACCGTTTCCACCATTTCAAGGACGGGCTGTGCTCTTGTGGGGATTATTGGTGAAGGTGACAAGCTTCAGATTTAGCTGTAAAGTCAACCTTTCAGGGAAGAAGTAAATTTGGTTCTTGCTGACTCGGACAGCTTTCATTCTAAAAGCTGAATTAAAAGGTCATTTAGAAAGGCAAAGGCAAATCATTCCCAAGGATATACCATGGTTAATGATTAGAAAAAACCAATGCTGAATTCATTAACAGAGAAATCATTACAAGTCTTTATTAACCAAATCTGGAATACGTTCTTAACAA

Ace file of the UniGene uagpf_v2_unigene54932

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene26550	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Pentatricopeptide repeat protein (Fragment) n=1 Tax=Cycas revoluta RepID=B3U1U9_CYCRE	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	pentatricopeptide repeat protein	-	-	80%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	C-5 cytosine methyltransferase	IPR001525	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: your sequence is shorter than subject: 44 - 246

Fln protein: RRDLGCHSATKFISKIVDREIIVRDANRFHHFKDGLCSCGDYW*

Protein Length: 45

Fln nts: CGTCGTGACCTTGGCTGTCACTCTGCTACCAAGTTCATCTCCAAGATTGTAGATCGGGAAATTATTGTGAGGGATGCAAACCGTTTCCACCATTTCAAGGACGGGCTGTGCTCTTGTGGGGATTATTGGTGA___AGGTGACAAGCTTCAGATTTAGCTGTAAAGTCAACCTTTCAGGGAAGAAGTAAATTTGGTTCTTGCTGACTCGGACAGCTTTCATTCTAAAAGCTGAATTAAAAGGTCATTTAGAAAGGCAAAGGCAAATCATTCCCAAGGATATACCATGGTTAATGATTAGAAAAAACCAATGCTGAATTCATTAACAGAGAAATCATTACAAGTCTTTATTAACCAAATCTGGAATACGTTCTTAACAA

Fln Alignment:

uagpf_mira_rep_c88579___CHSATKFISKIVDREIIVRDANRFHHFKDGLCSCGDYW
D5AAE0________________CHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
24	25			75	0.996473
26		75	25		0.996473
210	25		75		0.996473
253		75		25	0.996473
286		20		80	0.995505
310		66		33	0.997452
337		75		25	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain