SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54856

Length: 206 nt

UniGene Fasta

>uagpf_v2_unigene54856
CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATTCCGGTAGGGTTTCGTCAGGAGCAGAGCAATGGGCTTGAACGAGCCAATGAGGGTGTTTTTGAAGAGGGAATTGACCAGAAACTGGCCATTTCTGGTTGGTTTTGGCATTACGTTCACCATCGTAACCAAGATGTCTCTTGGCTTGACAGAGGAGGATGC

Ace file of the UniGene uagpf_v2_unigene54856

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17586	5/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	uncharacterized protein	-	-	2.20613e-27	76%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrial respiratory chain complex III	GO:0005750	Cellular Component	2.20613e-27	76%
Blast2go	mitochondrial proton-transporting ATP synthase complex	GO:0005753	Cellular Component	2.20613e-27	76%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRM1

Fln msg: Distance to subject end: 29 aas, W1: There is no M at the beginning,

Fln protein: PWLSRRDLGCHSIPVGFRQEQSNGLERANEGVFEEGIDQKLAISGWFWHYVHHRNQDVSWLDRGGC

Protein Length: 67

Fln nts: CGTCGTGACCTTGGCTGTCACGTCGTGACCTTGGCTGTCACTCAATTCCGGTAGGGTTTCGTCAGGAGCAGAGCAATGGGCTTGAACGAGCCAATGAGGGTGTTTTTGAAGAGGGAATTGACCAGAAACTGGCCATTTCTGGTTGGTTTTGGCATTACGTTCACCATCGTAACCAAGATGTCTCTTGGCTTGACAGAGGAGGATGC

Fln Alignment:

uagpf_mira_rep_c88082___IDQKLAISGWFWHYVHHRNQDVSWLDRGGC
C0PRM1________________MEQKLAISGRLWGYIRRRNQDVPWLDRGGC

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
25	20		80		0.995505
26	20			80	0.995505
28	80		20		0.995505
29		80		20	0.9955
30		80		20	0.9955
31	20			80	0.995498
32	20			80	0.995493
33	20		80		0.995493
35	20	80			0.995494
36	20			80	0.995493
39		80		20	0.995493
40	80			20	0.995493
41		80	20		0.995498

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain