SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54738

Length: 309 nt

UniGene Fasta

>uagpf_v2_unigene54738
CGTCGTGACCTTGGCTGTCACTCAAGATTGCGTCGTGACCTTGGCTGTCACTCAGGCTTGGGGTGTTCATACCAGGGTTGTTTTGGATGTGGGATGTGGTGTAGCAAGCTTTGGTGCCTTTTTGCTTTCTCGAAATGTATCAACACTTTCCATAGCTCCAAAAGATGTTCATGAAAATCAGATCCAGTTTGCTCTTGAACGTGGTGTTCCTGCTATGGTGGCAGCTTTTGCAACACACCGCCTTTTGTATCCCAGTCAGGCTTTTGACATGATTCACTGTTCGCGCTGTCGAATTGAATGGACTAATGA

Ace file of the UniGene uagpf_v2_unigene54738

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15124	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	putative methyltransferase PMT11 [Arabidopsis thaliana] sp\|O22285.1\|PMTB_ARATH RecName: Full=Probable methyltransferase PMT11 gb\|AAB87124.1\| expressed protein [Arabidopsis thaliana] gb\|AAK96646.1\| At2g39750/T5I7.5 [Arabidopsis thaliana] gb\|AAM70566.1\| At2	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	62%
Blast2go	probable methyltransferase pmt11-like	-	-	82%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 10	IPR001000	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Cytokine-induced anti-apoptosis inhibitor 1	IPR007785	-	-
Sma3		IPR017909	-	-
Sma3	Chaperonin Cpn60, conserved site	IPR018370	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LKS3

Fln msg: Distance to subject end: 319 aas, your sequence is shorter than subject: 102 - 637

Fln protein: VVTLAVTQDCVVTLAVTQAWGVHTRVVLDVGCGVASFGAFLLSRNVSTLSIAPKDVHENQIQFALERGVPAMVAAFATHRLLYPSQAFDMIHCSRCRIEWTN

Protein Length: 103

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAGATTGCGTCGTGACCTTGGCTGTCACTCAGGCTTGGGGTGTTCATACCAGGGTTGTTTTGGATGTGGGATGTGGTGTAGCAAGCTTTGGTGCCTTTTTGCTTTCTCGAAATGTATCAACACTTTCCATAGCTCCAAAAGATGTTCATGAAAATCAGATCCAGTTTGCTCTTGAACGTGGTGTTCCTGCTATGGTGGCAGCTTTTGCAACACACCGCCTTTTGTATCCCAGTCAGGCTTTTGACATGATTCACTGTTCGCGCTGTCGAATTGAATGGACTAATGA

Fln Alignment:

uagpf_mira_rep_c87413___GVHTRVVLDVGCGVASFGAFLLSRNVSTLSIAPKDVHENQIQFALERGVPAMVAAFATHRLLYPSQAFDMIHCSRCRIEW
B8LKS3________________GGKIRTVLDVGCGVASFGAYLLPLDIMAMSLAPNDVHQNQIQFALERGIPATLGVLGTERLPYPSMSFELAHCSRCRIDW

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
36	33			66	0.997471
39		66		33	0.997471
40		66	33		0.997471
41			33	66	0.997471

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain