SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54671

Length: 663 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene54671

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6175	7/7

Source	Descriptions	Term	Type	Identity
AutoFact	Probable V-type proton ATPase subunit d n=6 Tax=Poaceae RepID=VA0D_ORYSJ	-	-	90%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	v-type proton atpase subunit d2	-	-	95%

Source	ECs	Term	Type	e value	Identity
Blast2go	Transferases, Transferring phosphorous-containing groups, Protein-serine/threonine kinases.	EC:2.7.11.-	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	protein phosphorylation	GO:0006468	Biological Process	95%
Blast2go	ATP synthesis coupled proton transport	GO:0015986	Biological Process	95%
Blast2go	ATP hydrolysis coupled proton transport	GO:0015991	Biological Process	95%
Blast2go	protein serine/threonine kinase activity	GO:0004674	Molecular Function	95%
Blast2go	ATP binding	GO:0005524	Molecular Function	95%
Blast2go	proton-transporting ATPase activity, rotational mechanism	GO:0046961	Molecular Function	95%
Blast2go	plant-type vacuole	GO:0000325	Cellular Component	95%
Blast2go	proton-transporting V-type ATPase, V0 domain	GO:0033179	Cellular Component	95%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	ATPase, V0 complex, subunit D	IPR016727	-	0.0	-
Sma3	ATPase, V0/A0 complex, subunit C/D	IPR002843	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
67			33	66	0.997458
69		33	66		0.997458
70		66	33		0.997458
243	75		25		0.99649
245			25	75	0.99649
249	75	25			0.99649
251	75			25	0.99649
252	75			25	0.99649
253		66	33		0.997452
254	66		33		0.997452
255		33	66		0.997452
257			25	75	0.99649
292		20		80	0.995495
294			80	20	0.995495
297			80	20	0.995497
300		20	80		0.995495
303	75			25	0.996473
306	75	25			0.996473
307	75			25	0.996473
308	75		25		0.996473
312			66	33	0.997452
313		33	66		0.997452
354	80	20			0.995498
356			80	20	0.995498
358		80	20		0.995498
359	80			20	0.995498
363		20	80		0.995498
367		75	25		0.996473
368	75	25			0.996473
371	75			25	0.996473
374		25	75		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain