SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54637

Length: 562 nt

UniGene Fasta

>uagpf_v2_unigene54637
CGTCGTGACCTTGGCTGTCACTCAGTTGTGGAGGCTATTAAAACTTCCCTAGGACCCAAAAAGGCTTGACTTATGCTTCATCGAAGTTATTGTACACAAGGATGACACAAGCAAAGAGTTACTTGAGTGGGGCTCCAGAGTTTCGGCAGCAAATGGCAGGCCGCCGAATCCTCAGTAGGCAGGCTTTGAAAAGACGAGCAATTGGAAACATCATCTACGGCTCATGTTTGCAATGTTTTTTGTTCTGTAGGATATCATCCTATATATCTGAATTTGACTTTTCCTAGATCTGGGGTCGATATGTGGCTCTTCACTTGGGCACACCCATACTGCTACTTTTACATGTTTAGCGTCAAGACTGCATGAACAGCCTTAGTCTCTTTTTGCAATATGAACAAAATAACAAATGTTCCTGGTCAGGATATTTAGATCTAGAAGATCTTTAATTGGTGCCTCATATTTATCTAGATTACCAGCAATTATACCACTAAGGGATATGTATATCTATATATATAACTGATTTAATCAAACAGCTGTTACTTTGCAACAGTGGTTATATATC

Ace file of the UniGene uagpf_v2_unigene54637

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene30712	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	Pyruvate decarboxylase 1 n=1 Tax=Lotus corniculatus RepID=Q84V95_LOTCO	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	100%
Blast2go	pyruvate decarboxylase	-	-	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	catalytic activity	GO:0003824	Molecular Function	0.0	86%
Blast2go	membrane	GO:0016020	Cellular Component	0.0	86%

Source	InterPros	Term	Type	Identity
Sma3	Pyruvate decarboxylase/indolepyruvate decarboxylase	IPR012110	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRN0

Fln msg: Separated hits, possible frame ERROR between 63 and 74, your sequence is shorter than subject: 60 - 409

Fln protein: RRDLGCHSVVEAIKTSLGPKxxxxxCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ*

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTGTGGAGGCTATTAAAACTTCCCTAGGACCCAAAAAxxxxxxxxxxxxATGCTTCATCGAAGTTATTGTACACAAGGATGACACAAGCAAAGAGTTACTTGAGTGGGGCTCCAGAGTTTCGGCAGCAAATGGCAGGCCGCCGAATCCTCAGTAGGCAGGCTTTGAAAAGACGAGCAATTGGAAACATCATCTACGGCTCATGTTTGCAATGTTTTTTGTTCTGTAGGATATCATCCTATATATCTGAATTTGACTTTTCCTAGATCTGGGGTCGATATGTGGCTCTTCACTTGGGCACACCCATACTGCTACTTTTACATGTTTAGCGTCAAGACTGCATGAACAGCCTTAGTCTCTTTTTGCAATATGAACAAAATAACAAATGTTCCTGGTCAGGATATTTAGATCTAGAAGATCTTTAATTGGTGCCTCATATTTATCTAGATTACCAGCAATTATACCACTAAGGGATATGTATATCTATATATATAACTGATTTAATCAAACAGCTGTTACTTTGCAACAGTGGTTATATATC

Fln Alignment:

uagpf_mira_rep_c86761___VVEAIKTSLGPKKxxxxCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ
C0PRN0________________VVEAIKTSLGPKKxxxxCFIEVIVHKDDTSKELLEWGSRVSAANGRPPNPQ

SNPs (tot: 39)

Position	A %	C %	G %	T %	Probability
84	14		14	71	0.984345
85			28	14	1.0
88	85		14		0.993534
92			71	14	0.984337
93	83	16			0.994512
94	83	16			0.994512
95		16	83		0.994512
99	83		16		0.994512
100		16		83	0.994512
107	83			16	0.994512
159		83		16	0.994512
166		12		87	0.992555
168			87	12	0.992555
171	87			12	0.992555
173	12		87		0.992555
176			87	12	0.992555
177		85		14	0.993533
178		85	14		0.993533
181	85			14	0.993533
182	85		14		0.993533
200			22	77	0.999999
202		22		77	0.999999
204	77			22	0.999999
205	77		22		0.999999
207	77	22			0.999999
208		20	80		0.999996
209	80			20	0.999996
210		80		20	0.999996
215	77			22	0.999999
216	77		22		0.999999
218		22		77	0.999999
219	20		80		0.999996
220		20	80		0.999996
221	80			20	0.999996
222	80	20			0.999996
457	25	75			0.996473
459	25			75	0.996473
460	25			75	0.996473
466			75	25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain