SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54631

Length: 672 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene54631

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27833	16/17

Source	Descriptions	Term	Type	Identity
AutoFact	26S proteasome regulatory subunit N9 [Arabidopsis thaliana] dbj\|BAC42409.1\| unknown protein [Arabidopsis thaliana] gb\|AAP86669.1\| 26S proteasome subunit RPN9b [Arabidopsis thaliana] gb\|AEE84124.1\| 26S proteasome regulatory subunit N9 [Arabidopsis thaliana	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	26s proteasome regulatory subunit n9	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	92%

Source	InterPros	Term	Type	e value	Identity
Sma3	Proteasome component (PCI) domain	IPR000717	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
81		66	33		0.997476
84	33	66			0.997476
85		33	66		0.997476
86	33			66	0.997476
126	75	25			0.996479
128			75	25	0.996483
129		25	75		0.996483
130	75		25		0.996479
132	75		25		0.996479
134		25	75		0.996479
139	66		33		0.997452
141	66			33	0.997452
142	66		33		0.997452
145	33			66	0.997452
146		33	66		0.997452
147			66	33	0.997452
171		50		50	1.0
174		50		50	1.0
178	50	50			1.0
179		50		50	1.0
180		50	50		1.0
190	50			50	1.0
191	50	50			1.0
194		71		28	1.0
195		71		28	1.0
196	28	71			1.0
247	88	11			0.924009
248	88		11		0.923776
252	88			11	0.924009
253	88		11		0.924009
258	88	11			0.923564
263		87		12	0.992554
264	87		12		0.992554
267	11			88	0.923564
268		11		88	0.923564
270	88	11			0.923564
328		12		87	0.999964
329			12	87	0.999964
333	87			12	0.999964
350		12		87	0.999964
477			37	62	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain