SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54608

Length: 246 nt

UniGene Fasta

>uagpf_v2_unigene54608
CGTCGTGACCTTGGCTGTCACTCAATTTTAATTGACAATGAGGGTTTCGACTAAAAAGAGGATCGAAGGAGGGTACTAGGGTTATTGGGATTAAATAAGGAAGGCTTCTATTTACTGACCTTGTTTCACAAGCAGGGGAGGGAGCGGCGGCGGCGGCGGGAGTCTCGATTTTCAGCAGCCATGGCAGAACAGACTGAGAGAGCTTTTCTAAAGCAACCAAAAGTCTTTCTCAGTTCCAAGACGTCT

Ace file of the UniGene uagpf_v2_unigene54608

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5411	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S11-1 n=11 Tax=core eudicotyledons RepID=RS111_ARATH	-	-	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	40s ribosomal protein s11	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	embryo development ending in seed dormancy	GO:0009793	Biological Process	95%
Blast2go	translation	GO:0006412	Biological Process	95%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	95%
Blast2go	rRNA binding	GO:0019843	Molecular Function	95%
Blast2go	cell wall	GO:0005618	Cellular Component	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	chloroplast	GO:0009507	Cellular Component	95%
Blast2go	membrane	GO:0016020	Cellular Component	95%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	0.0	-
Sma3	Ribosomal protein S17	IPR000266	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN19

Fln msg: Distance to subject end: 138 aas, your sequence is shorter than subject: 22 - 160

Fln protein: MAEQTERAFLKQPKVFLSSKTS

Protein Length: 23

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTAATTGACAATGAGGGTTTCGACTAAAAAGAGGATCGAAGGAGGGTACTAGGGTTATTGGGATTAAATAAGGAAGGCTTCTATTTACTGACCTTGTTTCACAAGCAGGGGAGGGAGCGGCGGCGGCGGCGGGAGTCTCGATTTTCAGCAGCC_-_ATGGCAGAACAGACTGAGAGAGCTTTTCTAAAGCAACCAAAAGTCTTTCTCAGTTCCAAGACGTCT

Fln Alignment:

uagpf_mira_rep_c86541___MAEQTERAFLKQPKVFLSSKTS
A9NN19________________MAEQTERAFLKQPKVFLSSKKS

SSRs (tot: 1)

Start position	End position	Sequence	Length
144	159	GCG GCG GCG GCG GCG G	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain