SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54510

Length: 468 nt

UniGene Fasta

>uagpf_v2_unigene54510
CGTCGTGACCTTGGCTGTCACTCATGATGTGACTGTACCTTGTGGTCGCCCTGTACCTTCAGGTGCTAAAAACAGTGATTTGCTGTACAATGAGTATATCGTATATAATCCTGCTCAGGTGAAGCTGCAGTTTTTGTTAAAGGTGCGCTTCCAATACAAGCGACAAGAACGTTAGTGAGACTACCAGATCCGGCTGGAGTTTTTGGTTTCAATCTACGAGTAATTAGTGTATTGTCAACTGTAAAGCTCGGGTGTCATGAAAAAGCCTCTGATCTTCATCTTGTCGTAATTACTTGGATGGTTTGCATGTTCAGATATATCTTTACTAGAGTAGAAGAGTACTTGTATATATTTATTATATGGACTTCACCATTGTTGCAGCGATTTTATGGAGGATGACGTGCATGTGTCGAAACCGATTTATACATACACACAGAAATGTGTAAAGTTCTTGAAGGTTTTCCTTAA

Ace file of the UniGene uagpf_v2_unigene54510

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2363	10/10

Source	Descriptions	Term	Type	Identity
AutoFact	putative poly (ADP-ribose) polymerase [Arabidopsis thaliana]	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	poly	-	-	86%

Source	ECs	Term	Type	e value	Identity
Blast2go		EC:2.4.2.3-	-	0.0	86%
Blast2go	2-alkenal reductase.	EC:1.3.1.74	-	0.0	86%

Source	GOs	Term	Type	Identity
Blast2go	protein ADP-ribosylation	GO:0006471	Biological Process	86%
Blast2go	response to oxidative stress	GO:0006979	Biological Process	86%
Blast2go	response to abiotic stimulus	GO:0009628	Biological Process	86%
Blast2go	response to abscisic acid stimulus	GO:0009737	Biological Process	86%
Blast2go	oxidation-reduction process	GO:0055114	Biological Process	86%
Blast2go	DNA repair	GO:0006281	Biological Process	86%
Blast2go	NAD binding	GO:0051287	Molecular Function	86%
Blast2go	DNA binding	GO:0003677	Molecular Function	86%
Blast2go	NAD+ ADP-ribosyltransferase activity	GO:0003950	Molecular Function	86%
Blast2go	zinc ion binding	GO:0008270	Molecular Function	86%
Blast2go	2-alkenal reductase [NAD(P)] activity	GO:0032440	Molecular Function	86%
Blast2go	nucleus	GO:0005634	Cellular Component	86%

Source	InterPros	Term	Type	Identity
Sma3	BRCT domain	IPR001357	-	-
Sma3	Zinc finger, PARP-type	IPR001510	-	-
Sma3	DNA-binding SAP	IPR003034	-	-
Sma3	Poly(ADP-ribose) polymerase, regulatory domain	IPR004102	-	-
Sma3	Exocyst complex subunit Sec15-like	IPR007225	-	-
Sma3	NAD+ ADP-ribosyltransferase	IPR008288	-	-
Sma3	WGR domain	IPR008893	-	-
Sma3	Poly(ADP-ribose) polymerase, catalytic domain	IPR012317	-	-
Sma3	PADR1	IPR012982	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAL4

Fln msg: your sequence is shorter than subject: 58 - 456

Fln protein: VVTLAVTHDVTVPCGRPVPSGAKNSDLLYNEYIVYNPAQVKLQFLLKVRFQYKRQER*

Protein Length: 59

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGATGTGACTGTACCTTGTGGTCGCCCTGTACCTTCAGGTGCTAAAAACAGTGATTTGCTGTACAATGAGTATATCGTATATAATCCTGCTCAGGTGAAGCTGCAGTTTTTGTTAAAGGTGCGCTTCCAATACAAGCGACAAGAACGTTAG___TGAGACTACCAGATCCGGCTGGAGTTTTTGGTTTCAATCTACGAGTAATTAGTGTATTGTCAACTGTAAAGCTCGGGTGTCATGAAAAAGCCTCTGATCTTCATCTTGTCGTAATTACTTGGATGGTTTGCATGTTCAGATATATCTTTACTAGAGTAGAAGAGTACTTGTATATATTTATTATATGGACTTCACCATTGTTGCAGCGATTTTATGGAGGATGACGTGCATGTGTCGAAACCGATTTATACATACACACAGAAATGTGTAAAGTTCTTGAAGGTTTTCCTTAA

Fln Alignment:

uagpf_mira_rep_c85842___DVTVPCGRPVPSGAKNSDLLYNEYIVYNPAQVKLQFLLKVRFQYK
D5AAL4________________DVTVPCGRPVPSSVKNSDLLYNEYIVYDPAQVKLQFLLKVRFRYK

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
155			22	77	0.999999
159		77		22	0.999999
160	77		22		0.999999
162		22		77	0.999999
163	77	22			0.999999
164		77		22	0.999999
165	75			25	1.0
166	75		25		1.0
171	75			25	1.0
172		62		37	1.0
175	75	12		12	0.975346
176		12	75	12	0.975346
177	87	12			0.992554
246	62			37	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain