SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54414

Length: 346 nt

UniGene Fasta

>uagpf_v2_unigene54414
CGTCGTGACCTTGGCTGTCACTCAATTTTATGTTTTCTACTGTGTCTATTTTTTTCTCTTACCTGATCCTCCCATGCTGAGGGTCTTATATACCAGGGTTTCTGTATAAGGCAGCTTTCGTTTGCGTTCGCGTTATTTTTGGGCCTGCTCATATCTGTTTCTTGTGTTAGATATACAAAGACTAAAGTATGGGCTCAACTTCAGAGTCAGGCTCATTGAAGCCTCGAGATGTGTGCATTGTCGGTGTTGCCCGTACACCTCTTGGAGGCCTGAGTGGTTCTCTTTCGACATTGTCTGCAACGAAACTGGGATCGATAGCTATTACGGCTGCTCTAAGAGAGCGGGT

Ace file of the UniGene uagpf_v2_unigene54414

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72065	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Thiolase_N domain containing protein	-	-	2.0e-08	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTK9

Fln msg: Distance to subject end: 351 aas, your sequence is shorter than subject: 52 - 404

Fln protein: MGSTSESGSLKPRDVCIVGVARTPLGGLSGSLSTLSATKLGSIAITAALRER

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTATGTTTTCTACTGTGTCTATTTTTTTCTCTTACCTGATCCTCCCATGCTGAGGGTCTTATATACCAGGGTTTCTGTATAAGGCAGCTTTCGTTTGCGTTCGCGTTATTTTTGGGCCTGCTCATATCTGTTTCTTGTGTTAGATATACAAAGACTAAAGT_-_ATGGGCTCAACTTCAGAGTCAGGCTCATTGAAGCCTCGAGATGTGTGCATTGTCGGTGTTGCCCGTACACCTCTTGGAGGCCTGAGTGGTTCTCTTTCGACATTGTCTGCAACGAAACTGGGATCGATAGCTATTACGGCTGCTCTAAGAGAGCGGGT

Fln Alignment:

uagpf_mira_rep_c85213___MGSTSESGSLKPRDVCIVGVARTPXXXXXXXXXXXXXXXXXXIAITAALR
C0PTK9________________MGSTSELGSLKPRDVCIVGVARTPLGGLSGSLSTLSATKLGSIAIVAALK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain