SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54305

Length: 513 nt

UniGene Fasta

>uagpf_v2_unigene54305
CGTCGTGACCTTGGCTGTCGTGACTTTTGGTGTGAGTCTTTCCCCTGAATACCCGACGCGTTTTTTAGTGTAAGCAATTTCATTTATTCGGAGAAAGTAAGGAAGGAGCTCTCTCCGACAGCCGTTCCGGCCTTCCATCTCGATCTTCTCGAGAGACAATTGAAATCCAGGGTTTGTTCTTTCTTTTGGCAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTCATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGCAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGACCAAGCTGAGAGGGAAATTGCTTCTTACCGGGCACAGCGGGAAACTGAATTTCGAAGGAAGGTGGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGATGAAGAAACCAAAGCAAAGATTGAGCAT

Ace file of the UniGene uagpf_v2_unigene54305

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6718	4/5
SustainPine v2.0	sp_v2.0_unigene81520	1/5

Source	Descriptions	Term	Type	e value	Identity
AutoFact	60S ribosomal protein L26-2 n=2 Tax=Arabidopsis RepID=RL262_ARATH	-	-	3.0e-37	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	60s ribosomal protein l26	-	-	0.0	98%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on acid anhydrides, Acting on acid anhydrides; catalyzing transmembrane movement of substances.	EC:3.6.3.-	-	0.0	98%

Source	GOs	Term	Type	Identity
Blast2go	proton transport	GO:0015992	Biological Process	98%
Blast2go	translation	GO:0006412	Biological Process	98%
Blast2go	structural constituent of ribosome	GO:0003735	Molecular Function	98%
Blast2go	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	GO:0016820	Molecular Function	98%
Blast2go	large ribosomal subunit	GO:0015934	Cellular Component	98%
Blast2go	vacuolar proton-transporting V-type ATPase complex	GO:0016471	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	KOW	IPR005824	-	-
Sma3	Ribosomal protein L24/L26, conserved site	IPR005825	-	-
Sma3	Ribosomal protein L24, SH3-like	IPR014723	-	-
Sma3	Ribosomal protein L26/L24P, eukaryotic/archaeal	IPR005756	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNM3

Fln msg: Distance to subject end: 25 aas, your sequence is shorter than subject: 85 - 110

Fln protein: MGSNKGQGGIQLLLAAEQEAQHIVASARAAKMARLKQAKDQAEREIASYRAQRETEFRRKVAETSGDSGSNVKRLDEETKAKIEH

Protein Length: 86

Fln nts: CGTCGTGACCTTGGCTGTCGTGACTTTTGGTGTGAGTCTTTCCCCTGAATACCCGACGCGTTTTTTAGTGTAAGCAATTTCATTTATTCGGAGAAAGTAAGGAAGGAGCTCTCTCCGACAGCCGTTCCGGCCTTCCATCTCGATCTTCTCGAGAGACAATTGAAATCCAGGGTTTGTTCTTTCTTTTGGCAGAAGAGACGAATTGAACATCCAGGGTTTTCTTTGATTGATATATAACCACTGTATAGTTAGGCAGTC_-_ATGGGTTCAAACAAGGGGCAGGGTGGAATTCAGTTGTTACTGGCTGCAGAGCAGGAGGCACAACACATTGTTGCTTCTGCTAGAGCTGCAAAAATGGCTAGATTGAAACAAGCAAAAGACCAAGCTGAGAGGGAAATTGCTTCTTACCGGGCACAGCGGGAAACTGAATTTCGAAGGAAGGTGGCAGAGACCAGTGGTGATTCTGGATCCAATGTTAAGCGACTTGATGAAGAAACCAAAGCAAAGATTGAGCAT

Fln Alignment:

uagpf_mira_rep_c84562___MGSNKGQGGIQLLLAAEQEAQHIVASARAAKMARLKQAKDQAEREIASYRAQRETEFRRKVAETSGDSGSNVKRLDEETKAKIEH
B8LNM3________________MDSNKGQGGIQLLLAAEQEAQHIVASARSAKMARLKQAKDEAEREIASYRAQRETEFRKKVAETSGDSGSNVKRLEEETKEKIEH

SNPs (tot: 23)

Position	A %	C %	G %	T %	Probability
156	75			25	0.996476
160		25	75		0.996476
161	75			25	0.996476
162		66		33	0.997452
163	66		33		0.997452
164	66		33		0.997452
165		33		66	0.997452
168	66			33	0.997452
169	66	33			0.997452
171		33		66	0.997452
172		66		33	0.997452
206	80			20	0.995495
207	80	20			0.995495
208			20	80	0.995495
212	80	20			0.995495
214	80			20	0.995495
217		75	25		0.996473
219	75			25	0.996473
223	25		75		0.996473
224		25	75		0.996473
227	20			80	0.995505
423		66		33	0.997452
424	66	33			0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain