SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54273

Length: 619 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene54273

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene6966	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	PREDICTED: similar to oligopeptide transporter, putative n=1 Tax=Vitis vinifera RepID=UPI0001985618	-	-	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	67%
Blast2go	proton-dependent oligopeptide transport family protein	-	-	67%

Source	GOs	Term	Type	Identity
Blast2go	oligopeptide transport	GO:0006857	Biological Process	67%
Blast2go	transporter activity	GO:0005215	Molecular Function	67%
Blast2go	membrane	GO:0016020	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	PAK-box/P21-Rho-binding	IPR000095	-	-
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	PTR2 family proton/oligopeptide symporter, conserved site	IPR018456	-	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
63	66	33			0.997471
65	66			33	0.997458
69			33	66	0.997458
71	66	33			0.997459
72	66	33			0.997459
73			66	33	0.997458
106	40		60		1.0
107		40		60	1.0
108		40		60	1.0
110		40		60	1.0
111	40		60		1.0
114	40	60			1.0
115	40			60	1.0
117			40	60	1.0
118		40	60		1.0
120	40			60	1.0
121	40		60		1.0
123		40	60		1.0
227	77	22			0.999999
228	77		22		0.999999
232	77			22	0.999999
236		22	77		0.999999
242		22	77		0.999999
244	77		22		0.999999
250		22	77		0.999999
253	22		77		0.999999

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain