SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54238

Length: 758 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene54238 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15861	14/16
SustainPine v2.0	sp_v2.0_unigene73258	2/16

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glucuronic acid decarboxylase 2 [Populus tomentosa]	-	-	79%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	udp-glucuronic acid decarboxylase 2	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	UDP-glucuronate decarboxylase.	EC:4.1.1.35	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Starch and sucrose metabolism	00500	85%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	85%
Blast2go	Metabolic pathways	01100	85%

Source	GOs	Term	Type	Identity
Blast2go	D-xylose metabolic process	GO:0042732	Biological Process	85%
Blast2go	UDP-glucuronate decarboxylase activity	GO:0048040	Molecular Function	85%
Blast2go	Golgi membrane	GO:0000139	Cellular Component	85%
Blast2go	plasma membrane	GO:0005886	Cellular Component	85%
Blast2go	vacuolar membrane	GO:0005774	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	0.0	-
Sma3	NAD(P)-binding domain	IPR016040	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 48)

Position	A %	C %	G %	T %	Probability
309		81		18	0.999994
317		18	81		0.999994
318	18			81	0.999994
319			18	81	0.999994
320		18		81	0.999994
321		18	81		0.999994
322	18			81	0.999994
323	18	81			0.999994
326			81	18	0.999994
331	81		18		0.999994
334	9	72	18		0.999994
335			11	88	0.923564
338		77	22		0.999999
340		11	11	77	0.968132
341	11			88	0.923564
342			22	77	0.999999
343	11	11		77	0.968132
347	11	11		77	0.968132
348		11	11	77	0.968132
349	88		11		0.923564
350	88			11	0.923564
351		88	11		0.923564
352	88		11		0.923564
353		11		88	0.923564
354		11	11	77	0.968132
359	87	12			0.992554
371	85			14	0.993533
373	14		85		0.993533
374		85	14		0.993533
378	85	14			0.993533
379	14		85		0.993533
381	85	14			0.993533
382		14		85	0.993533
385	85		14		0.993533
388	85	14			0.993533
390	85	14			0.993533
392	14			85	0.993533
420	33			50	1.0
421	33		66		1.0
423		33	66		1.0
424	33			66	1.0
433	50	50			1.0
434	50			50	1.0
436		33	66		1.0
439	50	50			1.0
668		66		33	0.997458
672	66		33		0.997458
674		33		66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain