SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54221

Length: 989 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene54221

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27863	2/21
SustainPine v2.0	sp_v2.0_unigene60538	9/21
SustainPine v2.0	sp_v2.0_unigene61181	10/21

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative DnaJ protein n=1 Tax=Camellia sinensis RepID=Q2L989_CAMSI	-	-	5.0e-31	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	chaperone protein dnaj chloroplast	-	-	0.0	67%

Source	GOs	Term	Type	Identity
Blast2go	response to stress	GO:0006950	Biological Process	67%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	67%
Blast2go	nucleus	GO:0005634	Cellular Component	67%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3		IPR015609	-	-
Sma3	Heat shock protein DnaJ	IPR003095	-	-

Full-Lengther Next Prediction

SNPs (tot: 38)

Position	A %	C %	G %	T %	Probability
276	76	7			0.999983
278	75	16		8	0.99999
279	75	8		16	0.99999
281	76			23	1.0
282	76	15	7		0.999984
284		25	75		1.0
285	72	9		18	0.999994
287	18			81	0.999994
293		10	90		0.90298
295	88	11			0.923564
296			88	11	0.923564
297	90	10			0.903503
443	80		20		0.995493
606	66	33			0.997458
609	66	33			0.997458
610	66		33		0.997458
614		33	66		0.997458
615	66	33			0.997458
659	66		16		0.988813
661		40		60	1.0
662	83		16		0.994514
663	66			16	0.988813
664		66	16		0.988813
666		16		83	0.994515
667		16		83	0.994515
672		80	20		0.995493
678		20		80	0.995493
681	80	20			0.995493
688	85		14		0.993534
691	85		14		0.993534
694	85		14		0.993535
700	83			16	0.994512
703		83	16		0.994512
704	83	16			0.994512
706	83		16		0.994512
710		16	83		0.994512
713	16			83	0.994512
888			16	83	0.994513

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain