SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene54089

Length: 177 nt

UniGene Fasta

>uagpf_v2_unigene54089
CGTCGTGACCTTGGCTGTCACTCAATGTTTGTTGATTCCTGCCAAAGAATGCGGATCATGACGGCTTCGGAAGCTATTGGTTTAGCGCCAAGGGCCATGGAAAATTGTAAAAACAGGAATAGAGTCCACCCATAGTGTTCATTGTTCAGTGAATCTGGAACCTGATTATTCATGATA

Ace file of the UniGene uagpf_v2_unigene54089

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11213	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Auxin-induced protein 3 n=1 Tax=Pinus taeda RepID=Q7XYT4_PINTA	-	-	88%
FL-Next	tr=Auxin-induced protein 3; Pinus taeda (Loblolly pine).	-	-	97%
Blast2go	auxin-responsive protein	-	-	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein dimerization activity	GO:0046983	Molecular Function	0.0	69%
Blast2go	nucleus	GO:0005634	Cellular Component	0.0	69%

Source	InterPros	Term	Type	e value	Identity
Sma3	AUX/IAA protein	IPR003311	-	0.0	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q7XYT4

Fln msg: your sequence is shorter than subject: 45 - 252

Fln protein: RRDLGCHSMFVDSCQRMRIMTASEAIGLAPRAMENCKNRNRVHP*

Protein Length: 46

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTGTTGATTCCTGCCAAAGAATGCGGATCATGACGGCTTCGGAAGCTATTGGTTTAGCGCCAAGGGCCATGGAAAATTGTAAAAACAGGAATAGAGTCCACCCATAG___TGTTCATTGTTCAGTGAATCTGGAACCTGATTATTCATGATA

Fln Alignment:

uagpf_mira_rep_c82982___MFVDSCQRMRIMTASEAIGLAPRAMENCKNRNRVHP
Q7XYT4________________MFVDSCQRMRIMTASEAIGLAPRTMENCKNRNRVHP

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain