SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53860

Length: 330 nt

UniGene Fasta

>uagpf_v2_unigene53860
CGTCGTGACCTTGGCTGTCACTCAAACATTCCAATTTTTATATTTCCCCTGAACATTTTTTTCTTCTGCTTGGGATCGGTTCAGAAGTGTATTGGGGACTCCTGATTATCGCCAAGTGTCAATCTTGAGGTGTTTTGGGGAATTGGGTTCGTCGTGTCTTGGCTGTCTGTCAGGTTTTAGTGAAAATCGATGGCCCACAGCAGATTAGCAGTACTTTCTGGTCATTTATCGGTTCCTCCGGTGGGTTCTTCCTTAGGTATTGAGACTTCTACAGTGTCTGTAAAGCTCTCGGGGGATCTGAGAGGTTCTCTGACTGTTATTGATAACCGA

Ace file of the UniGene uagpf_v2_unigene53860

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene15916	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Citrate synthase n=1 Tax=Picea sitchensis RepID=D5AAX0_PICSI	-	-	94%
FL-Next	sp=Citrate synthase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	93%
Blast2go	protein	-	-	89%

Source	ECs	Term	Type	e value	Identity
Blast2go	Citrate (Si)-synthase.	EC:2.3.3.1	-	0.0	89%

Source	KEGGs	Term	Identity
Blast2go	Citrate cycle (TCA cycle)	00020	89%
Blast2go	Glyoxylate and dicarboxylate metabolism	00630	89%
Blast2go	Biosynthesis of phenylpropanoids	01061	89%
Blast2go	Biosynthesis of terpenoids and steroids	01062	89%
Blast2go	Biosynthesis of alkaloids derived from shikimate pathway	01063	89%
Blast2go	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	89%
Blast2go	Biosynthesis of alkaloids derived from histidine and purine	01065	89%
Blast2go	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	89%
Blast2go	Biosynthesis of plant hormones	01070	89%
Blast2go	Metabolic pathways	01100	89%
Blast2go	Biosynthesis of secondary metabolites	01110	89%

Source	GOs	Term	Type	Identity
Blast2go	fatty acid beta-oxidation	GO:0006635	Biological Process	89%
Blast2go	citrate (Si)-synthase activity	GO:0004108	Molecular Function	89%
Blast2go	peroxisome	GO:0005777	Cellular Component	89%

Source	InterPros	Term	Type	e value	Identity
Sma3	Citrate synthase-like, large alpha subdomain	IPR016142	-	0.0	-
Sma3	Citrate synthase-like	IPR002020	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAX0

Fln msg: Distance to subject end: 451 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 47 - 509

Fln protein: MAHSRLAVLSGHLSVPPVGSSLGIETSTVSVKLSGDLRGSLTVIDNR

Protein Length: 48

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAACATTCCAATTTTTATATTTCCCCTGAACATTTTTTTCTTCTGCTTGGGATCGGTTCAGAAGTGTATTGGGGACTCCTGATTATCGCCAAGTGTCAATCTTGAGGTGTTTTGGGGAATTGGGTTCGTCGTGTCTTGGCTGTCTGTCAGGTTTTAGTGAAAATCG_-_ATGGCCCACAGCAGATTAGCAGTACTTTCTGGTCATTTATCGGTTCCTCCGGTGGGTTCTTCCTTAGGTATTGAGACTTCTACAGTGTCTGTAAAGCTCTCGGGGGATCTGAGAGGTTCTCTGACTGTTATTGATAACCGA

Fln Alignment:

uagpf_mira_rep_c81349___KSMAHSRLAVLSGHLSVPPVGSSLGIETSTVSVKLSGDLRGSLTVIDNR
D5AAX0________________KSMAHSRLAVLSGHLSVPPAGSSLGIETSTVSVKPSGNLRGSLTVIDNR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain