SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53843

Length: 534 nt

UniGene Fasta

>uagpf_v2_unigene53843
CGTCGTGACCTTGGCTGTCACTCAATTTTATCAAAATGAGTGGTGGTTGGCATGTTTGTTTTTGGGCTTCTGCCTTTCTGTTCTTTCTTCGTTTTCTTCAGCCAGCTGCAGCCAGAGGAAGTGGGTTTGTGACGTTGGCTGTCACCCATTTTTCTGTCAACGGGTATCCTCTGTTTGTCAATGGGTTCAACTCGTACTGGTTAATGACTGTGGCAACAGATTCAACACAGAGAAATAAGGTTACCTCTGCTTTTGAACAAGCTGCAGCTCATGGGCTTAATGTTGCCAGAACTTGGGCCTTCAACGACGGCCAGTACAAGGCACTGCAGACTTCTCCTGGTGTATATGATGAACAAGTCTTTCAGGCCTTAGACTTTGTGGTCTCTGAAGCCAAGAAGTATGGTCTCAGACTAATACTAAGCCTTGCGAACAATTATGTGAACTTTGGAGGAAAGGCCCAGTATGTACAATGGGCTCGCAATGCTGGACAGAATCTCAACTCTGAGGATGATTCTTCACCAATCCCACTTTCGC

Ace file of the UniGene uagpf_v2_unigene53843

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene60768	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	-	-	2.0e-11	15%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	mannan endo- -beta-mannosidase 7	-	-	0.0	79%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A9Z9

Fln msg: Distance to subject end: 255 aas, atg_distance in limit (1-15): atg_distance = 2, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 166 - 429

Fln protein: MSGGWHVCFWASAFLFFLRFLQPAAARGSGFVTLAVTHFSVNGYPLFVNGFNSYWLMTVATDSTQRNKVTSAFEQAAAHGLNVARTWAFNDGQYKALQTSPGVYDEQVFQALDFVVSEAKKYGLRLILSLANNYVNFGGKAQYVQWARNAGQNLNSEDDSSPIPLS

Protein Length: 167

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTATCAAA_-_ATGAGTGGTGGTTGGCATGTTTGTTTTTGGGCTTCTGCCTTTCTGTTCTTTCTTCGTTTTCTTCAGCCAGCTGCAGCCAGAGGAAGTGGGTTTGTGACGTTGGCTGTCACCCATTTTTCTGTCAACGGGTATCCTCTGTTTGTCAATGGGTTCAACTCGTACTGGTTAATGACTGTGGCAACAGATTCAACACAGAGAAATAAGGTTACCTCTGCTTTTGAACAAGCTGCAGCTCATGGGCTTAATGTTGCCAGAACTTGGGCCTTCAACGACGGCCAGTACAAGGCACTGCAGACTTCTCCTGGTGTATATGATGAACAAGTCTTTCAGGCCTTAGACTTTGTGGTCTCTGAAGCCAAGAAGTATGGTCTCAGACTAATACTAAGCCTTGCGAACAATTATGTGAACTTTGGAGGAAAGGCCCAGTATGTACAATGGGCTCGCAATGCTGGACAGAATCTCAACTCTGAGGATGATTCTTCACCAATCCCACTTTCGC

Fln Alignment:

uagpf_mira_rep_c81229___LRFLQPAAARGSGFVTLAVTHFSVNGYPLFVNGFNSYWLMTVATDSTQRNKVTSAFEQAAAHGLNVARTWAFNDGQYKALQTSPGVYDEQVFQALDFVVSEAKKYGLRLILSLANNYVNFGGKAQYVQWARNAGQNLNSEDDS
D5A9Z9________________LPFSQPRMS----FVERNGSHFVVDDKELYVNGWNSYWLMDQSVGDSTRHRVKTMLRRGAEMGLTVVRTWAFNDGGYNALQQFPGTFDERVLRALDFVIVEARRNGLRLIFSLVNNLNAYGGKVQYVEWAHAAGINVGSSNDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain