SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53833

Length: 408 nt

UniGene Fasta

>uagpf_v2_unigene53833
CGTCGTGACCTTGGCTGTCACTCAATTATCCACTTCACAGGCTTATGATTTCTCATATCTTTACCCTTATATAATCTGCTCTTCCTCTCTTAAACTCTCATAGGTTTCCAGTGTCTGGAAATCTCTTGACCAGATGCAGAGGGCTCTGTTGAGTAGTTTTAACTTGTAAATTTGGGAATGTGTATTTTGTTCTGAGTCTGTGGACTTTCTTTTATCAAATGGGTGTTGACAGGCAGATAAGCTTTTGGGCCCTTGCCTGTTTGCTCTTTCTCAGTTTTCTCAGCAAACTGCAGCAAGAGGAAATGGGTTTGTGAAGACAGAGGGCAACCGTTTTTCTGTCAATGGGAATCCTCTGTTTGTCAATGGGTTCAACTCTTACTGGTTAATGGCTATGGCAGCAGATCCAAC

Ace file of the UniGene uagpf_v2_unigene53833

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32280	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00150, Cellulase, Cellulase (glycosyl hydrolase family 5)	-	-	7.0e-13	15%
FL-Next	Isoform 2 of Mannan endo-1,4-beta-mannosidase 1 OS=Oryza sativa subsp. japonica GN=MAN1	-	-	0.0	61%
Blast2go	mannan endo- -beta-mannosidase 7	-	-	0.0	74%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Glycoside hydrolase, family 5	IPR001547	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q0JKM9-2

Fln msg: Distance to subject end: 333 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 59 - 403

Fln protein: QADKLLGPCLFALSQFSQQTAARGNGFVKTEGNRFSVNGNPLFVNGFNSYWLMAMAADP

Protein Length: 60

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATCCACTTCACAGGCTTATGATTTCTCATATCTTTACCCTTATATAATCTGCTCTTCCTCTCTTAAACTCTCATAGGTTTCCAGTGTCTGGAAATCTCTTGACCAGATGCAGAGGGCTCTGTTGAGTAGTTTTAACTTGTAAATTTGGGAATGTGTATTTTGTTCTGAGTCTGTGGACTTTCTTTTATCAAATGGGTGTTGACAGGCAGATAAGCTTTTGGGCCCTTGCCTGTTTGCTCTTTCTCAGTTTTCTCAGCAAACTGCAGCAAGAGGAAATGGGTTTGTGAAGACAGAGGGCAACCGTTTTTCTGTCAATGGGAATCCTCTGTTTGTCAATGGGTTCAACTCTTACTGGTTAATGGCTATGGCAGCAGATCCAAC

Fln Alignment:

uagpf_mira_rep_c81164___GNGFVKTEGNRFSVNGNPLFVNGFNSYWLMAMAADP
Q0JKM9-2______________GGGFVRAQGTRFVLDGNPYYANGFNAYWLMLLAADP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain