SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53773

Length: 370 nt

UniGene Fasta

>uagpf_v2_unigene53773
CGTCGTGACCTTGGCTGTCACTCATTTTTTGGCTATTTAAAGATAGATCAGGAACGGAGAAGCTTCAAAAACAGCATTCCCCATTTTCTACAGGAGCGTTGGGCATCATCCGAGTAATTAGCAAGCCCGTTGGATCAGGGTAAGCTCAGTACTAGCAAGCCCGGAGGATCAGGATATACAAAGACTAAAGTATGGGCTCAACTTCAGAGTCAGGCTCATTGAAGCCTCGAGATGTGTGCATTGTCGGTGTTGCCCGTACACCTCTTGGAGGCCTGAGTGGTTCTCTTTCGCATTGTCTGCACGAAACTGGGATCGATAGCTATTACGGCTGCTCTTAAGAGAGCGGGTGTTGAATCCGGAATGGTCCAAG

Ace file of the UniGene uagpf_v2_unigene53773

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene62023	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	truncated acetyl Co-A acetyltransferase-like protein [Hevea brasiliensis]	-	-	1.0e-05	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	unknown [Picea sitchensis]	-	-	1.1116e-13	93%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Thiolase	IPR002155	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTK9

Fln msg: Separated hits, possible frame ERROR between 263 and 283, Distance to subject end: 344 aas, your sequence is shorter than subject: 60 - 404

Fln protein: MGSTSESGSLKPRDVCIVGVARTxxxxxxxxLFRIVCTKLGSIAITAALKRAGVESGMVQ

Protein Length: 61

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTTTGGCTATTTAAAGATAGATCAGGAACGGAGAAGCTTCAAAAACAGCATTCCCCATTTTCTACAGGAGCGTTGGGCATCATCCGAGTAATTAGCAAGCCCGTTGGATCAGGGTAAGCTCAGTACTAGCAAGCCCGGAGGATCAGGATATACAAAGACTAAAGT_-_ATGGGCTCAACTTCAGAGTCAGGCTCATTGAAGCCTCGAGATGTGTGCATTGTCGGTGTTGCCCGTACACCxxxxxxxxxxxxxxxxxxxxxTCTCTTTCGCATTGTCTGCACGAAACTGGGATCGATAGCTATTACGGCTGCTCTTAAGAGAGCGGGTGTTGAATCCGGAATGGTCCAAG

Fln Alignment:

uagpf_mira_rep_c80779___MGSTSESGSLKPRDVCIVGVARTPxxxxxxxLFRIVCTKLGSIAITAALKRAGVESGMVQ
C0PTK9________________MGSTSELGSLKPRDVCIVGVARTPxxxxxxxLSTLSATKLGSIAIVAALKRAGVESGMVQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain