SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53637

Length: 304 nt

UniGene Fasta

>uagpf_v2_unigene53637
CGTCGTGACCTTGGCTGTCACTCAAATCTTATGAATGCCTACTGTCACAGGCAAGCCGTTGTGTTCTTGGCTGTCGCTTTTCTGTACAATGGACGCCACCTGAGAGGCGAACAAACTCCTGATGAGCTTGACATGGAGGATGGGCATGAAATTCATGCCATGTTTCGCTAGATTGCTGGGACATTTGAATGAATCTTTGACAAGGGTCAATGATTGAACCGAGCAATTCTTATTTAGGAGTTTCAGTATATATGACATTTTCATTCATGTTTGGCCATAATGATCATTTTTTCATTTTCATTCA

Ace file of the UniGene uagpf_v2_unigene53637

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21106	3/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	small ubiquitin-related modifier 2 [Arabidopsis thaliana] sp\|Q9FLP6.1\|SUMO2_ARATH RecName: Full=Small ubiquitin-related modifier 2; Short=AtSUMO2 dbj\|BAB08585.1\| ubiquitin-like protein SMT3-like [Arabidopsis thaliana] gb\|AAL91628.1\| AT5g55160/MCO15_11 [Ar	-	-	2.0e-18	54%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	64%
Blast2go	ubiquitin-like protein smt3	-	-	1.12748e-23	67%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein sumoylation	GO:0016925	Biological Process	1.12748e-23	67%
Blast2go	response to heat	GO:0009408	Biological Process	1.12748e-23	67%
Blast2go	protein tag	GO:0031386	Molecular Function	1.12748e-23	67%
Blast2go	cytoplasm	GO:0005737	Cellular Component	1.12748e-23	67%
Blast2go	nucleus	GO:0005634	Cellular Component	1.12748e-23	67%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Inorganic pyrophosphatase	IPR008162	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN85

Fln msg: your sequence is shorter than subject: 57 - 105

Fln protein: RRDLGCHSNLMNAYCHRQAVVFLAVAFLYNGRHLRGEQTPDELDMEDGHEIHAMFR*

Protein Length: 58

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAATCTTATGAATGCCTACTGTCACAGGCAAGCCGTTGTGTTCTTGGCTGTCGCTTTTCTGTACAATGGACGCCACCTGAGAGGCGAACAAACTCCTGATGAGCTTGACATGGAGGATGGGCATGAAATTCATGCCATGTTTCGCTAG___ATTGCTGGGACATTTGAATGAATCTTTGACAAGGGTCAATGATTGAACCGAGCAATTCTTATTTAGGAGTTTCAGTATATATGACATTTTCATTCATGTTTGGCCATAATGATCATTTTTTCATTTTCATTCA

Fln Alignment:

uagpf_mira_rep_c79841___LMNAYCHRQAVVFLAVAFLYNGRHLRGEQTPDELDMEDGHEIHAMFR*IAG
A9NN85________________LMNAYCDRQSVDFNSIAFLFDGRRLRGEQTPEELEMEDGDEIDAMLHQTGG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain