SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53409

Length: 149 nt

UniGene Fasta

>uagpf_v2_unigene53409
CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAAGGGTCAAAGAGAATATTTGCGGAATTATGCGCTTCCAAATCCACGTACCTATGTTAGTTCAAAAGGTTATTCATTTGCCAAGGGACATACAGAGGTTCTTTC

Ace file of the UniGene uagpf_v2_unigene53409

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene27993	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	Proteasome subunit beta type n=1 Tax=Picea sitchensis RepID=A9NYV8_PICSI	-	-	96%
FL-Next	sp=Proteasome subunit beta type; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	proteasome subunit beta type 7-a precursor	-	-	92%

Source	GOs	Term	Type	e value	Identity
Blast2go	peptidase activity	GO:0008233	Molecular Function	0.0	92%
Blast2go	proteasome complex	GO:0000502	Cellular Component	0.0	92%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase T1A, proteasome beta-subunit	IPR000243	-	-
Sma3	Proteasome, subunit alpha/beta	IPR001353	-	-
Sma3	Proteasome, beta-type subunit, conserved site	IPR016050	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NYV8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 20 aas, your sequence is shorter than subject: 49 - 273

Fln protein: RRDLGCHSS*PWLSLKGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVL

Protein Length: 50

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTCGTGACCTTGGCTGTCACTCAAGGGTCAAAGAGAATATTTGCGGAATTATGCGCTTCCAAATCCACGTACCTATGTTAGTTCAAAAGGTTATTCATTTGCCAAGGGACATACAGAGGTTCTTTC

Fln Alignment:

uagpf_mira_rep_c77998___KGQREYLRNYALPNPRTYVSSKGYSFAKGHTEVL
A9NYV8________________KGQKEYLRNYELPNPRTYVSSKGYSFAKGHTEVL

SNPs (tot: 3)

Position	A %	C %	G %	Probability
24	33		66	0.997476
32		66	33	0.997476
47	33	66		0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain