SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53340

Length: 992 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene53340

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene876	10/11

Source	Descriptions	Term	Type	Identity
AutoFact	transducin/WD40 domain-containing protein [Arabidopsis thaliana] gb\|AAF76355.1\| hypothetical protein [Arabidopsis thaliana] gb\|AAO42310.1\| unknown protein [Arabidopsis thaliana] gb\|AAP04120.1\| unknown protein [Arabidopsis thaliana] gb\|AEE74922.1\| transduc	-	-	53%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	31%
Blast2go	probable u3 small nucleolar rna-associated protein 7-like	-	-	74%

Source	InterPros	Term	Type	Identity
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	BING4, C-terminal domain	IPR012952	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
467		50		50	1.0
468	50		50		1.0
470	50	50			1.0
471	50		50		1.0
476		50	50		1.0
477		33		66	1.0
481	50		50		1.0
487		50		50	1.0
489		50	50		1.0
490			50	50	1.0
491	50	50			1.0
492	50	50			1.0
507	33		66		1.0
514		20		80	0.995495
517		20	80		0.995495
519	80			20	0.995495
521	20	80			0.995497
525	75			25	0.996473
526	75		25		0.996473
527			25	75	0.996473
528	75	25			0.996473
532	40	40		20	1.0
538	25	75			0.996473
609			50	50	1.0
613	40			60	1.0
661	83		16		0.994513
663		16	83		0.994513
664		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain