SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53283

Length: 415 nt

UniGene Fasta

>uagpf_v2_unigene53283
CGTCGTGACCTTGGCTGTCACTCAACTGTGTCGTTGGCTGTCACTATTGAGCATGGATTATGGCGAGGGATTACTGTCGTTGAATTTGGGGACAATGAAAAAGTTTGAAAAACATGATAAAATTTGTCCGTGCAAGGAGAATTTAGCCCAATGCAGTGGCTAAGATCATACTCGGTAAATGTAGATGGTATTTTAAATGTGCTCTAAAAACACTCGTCGTGACCTTGGCTGTCACTCATTTTCTCCCAGTTGAACTTCTGTTCTCATTTGCCGCTGCTATACTGGCTTTTGTTACAATCAAAGCTAATGATTGCAATGCATGAACATCGATAATTTTGGAATTCCTGCAACGATCAAGATACTTCCTGATCCATGGACACCTGAAACTGGACTTTTGACAGCAGCATTTGAAGCG

Ace file of the UniGene uagpf_v2_unigene53283

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25251	7/8

Source	Descriptions	Term	Type	Identity
AutoFact	long chain acyl-CoA synthetase 9 [Arabidopsis thaliana] sp\|Q9CAP8.1\|LACS9_ARATH RecName: Full=Long chain acyl-CoA synthetase 9, chloroplastic gb\|AAG51668.1\|AC010704_12 putative acyl-CoA synthetase; 62297-59022 [Arabidopsis thaliana] gb\|AAM28876.1\|AF503759	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	68%
Blast2go	annotation was added to scaffolds in november 2011~long-chain-fatty-acid- ligase	-	-	82%

Source	ECs	Term	Type	e value	Identity
Blast2go	Long-chain-fatty-acid--CoA ligase.	EC:6.2.1.3	-	0.0	82%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Fatty acid metabolism	00071		0.0	82%
Blast2go	Metabolic pathways	01100		0.0	82%

Source	GOs	Term	Type	Identity
Blast2go	long-chain fatty acid-CoA ligase activity	GO:0004467	Molecular Function	82%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	82%
Blast2go	membrane	GO:0016020	Cellular Component	82%
Blast2go	endoplasmic reticulum	GO:0005783	Cellular Component	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	0.0	-
Sma3	Lipocalin	IPR002345	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACR7

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 18 aas, your sequence is shorter than subject: 138 - 197

Fln protein: VVTLAVTQLCRWLSLLSMDYGEGLLSLNLGTMKKFEKHDKICPCKENLAQCSG*DHTR*M*MVF*MCSKNTRRDLGCHSFSPS*TSVLICRCYTGFCYNQS**LQCMNIDNFGIPATIKILPDPWTPETGLLTAAFEA

Protein Length: 139

Fln nts: CGTCGTGACCTTGGCTGTCACTCAACTGTGTCGTTGGCTGTCACTATTGAGCATGGATTATGGCGAGGGATTACTGTCGTTGAATTTGGGGACAATGAAAAAGTTTGAAAAACATGATAAAATTTGTCCGTGCAAGGAGAATTTAGCCCAATGCAGTGGCTAAGATCATACTCGGTAAATGTAGATGGTATTTTAAATGTGCTCTAAAAACACTCGTCGTGACCTTGGCTGTCACTCATTTTCTCCCAGTTGAACTTCTGTTCTCATTTGCCGCTGCTATACTGGCTTTTGTTACAATCAAAGCTAATGATTGCAATGCATGAACATCGATAATTTTGGAATTCCTGCAACGATCAAGATACTTCCTGATCCATGGACACCTGAAACTGGACTTTTGACAGCAGCATTTGAAGCG

Fln Alignment:

uagpf_mira_rep_c77216___IDNFGIPATIKILPDPWTPETGLLTAAFE
D5ACR7________________LDKFEIPSKIKLLPDPWTPETGLVTAALK

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
220			71	28	1.0
229		71	28		1.0
230			33	66	1.0
231	33			66	1.0
232	33		66		1.0
233			66	33	1.0
234		66		33	1.0
236	33		66		1.0
237	33			66	1.0
242			33	66	1.0
254		87	12		0.992556
255	87			12	0.992555
256		12	87		0.992555
257			12	87	0.992555
261	87	12			0.992555
272	14			85	0.993533
340	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain