SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53275

Length: 447 nt

UniGene Fasta

>uagpf_v2_unigene53275
CGTCGTGACCTTGGCTGTCACTCATTTTACTCTCAAGGGCTTAAAACTTTTCCAATGCCCTAAAGAGCTTGCGGAGGAACATTACAGAGACCTTAAATCGAAGCCTTTCTTCCCAAAATTGGTTAAGTACATCACATCTGGTCCCGTCGTGACCTTGGCTGTCACTCAGTCCGGGTATTGTAGCTGCTGCTCGTAAGCTGATTGGTGCTACAAATCCTCTGCAAGCTGAACCTGGTACCATTCGAGGCGATCTTGCAATTCAAGTTGGGAGGAATGTTGTTCATGGGAGTGATAGCCAGGAAAACGGACAACGTGAAGTAGCTCTATGGTTCAAAGATGGCGAACTTTGTGAATGGACACAGGAGATAACACCTTGGCTGAGGGAATAGCGTGTTCAAATGAGATATGACTCTCAAAATTTTCCCCAATTCTTACAACAGTGTATGC

Ace file of the UniGene uagpf_v2_unigene53275

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25282	9/9

Source	Descriptions	Term	Type	Identity
AutoFact	Nucleoside diphosphate kinase n=1 Tax=Ricinus communis RepID=B9RAM1_RICCO	-	-	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	91%
Blast2go	nucleoside diphosphate kinase	-	-	85%

Source	ECs	Term	Type	e value	Identity
Blast2go	Nucleoside-diphosphate kinase.	EC:2.7.4.6	-	0.0	85%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	85%
Blast2go	Pyrimidine metabolism	00240	85%
Blast2go	Metabolic pathways	01100	85%
Blast2go	Biosynthesis of secondary metabolites	01110	85%

Source	GOs	Term	Type	Identity
Blast2go	response to hydrogen peroxide	GO:0042542	Biological Process	85%
Blast2go	red, far-red light phototransduction	GO:0009585	Biological Process	85%
Blast2go	auxin mediated signaling pathway	GO:0009734	Biological Process	85%
Blast2go	nucleoside diphosphate phosphorylation	GO:0006165	Biological Process	85%
Blast2go	nucleoside diphosphate kinase activity	GO:0004550	Molecular Function	85%
Blast2go	identical protein binding	GO:0042802	Molecular Function	85%
Blast2go	chloroplast envelope	GO:0009941	Cellular Component	85%
Blast2go	chloroplast stroma	GO:0009570	Cellular Component	85%
Blast2go	thylakoid	GO:0009579	Cellular Component	85%
Blast2go	nucleus	GO:0005634	Cellular Component	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Nucleoside diphosphate kinase	IPR001564	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AEB8

Fln msg: Separated hits, possible frame ERROR between 160 and 174, your sequence is shorter than subject: 130 - 268

Fln protein: VVTLAVTHFTLKGLKLFQCPKELAEEHYRDLKSKPFFPKLVKYITSGPVVTLxxxxxxGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDSQENGQREVALWFKDGELCEWTQEITPWLRE*

Protein Length: 131

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTTACTCTCAAGGGCTTAAAACTTTTCCAATGCCCTAAAGAGCTTGCGGAGGAACATTACAGAGACCTTAAATCGAAGCCTTTCTTCCCAAAATTGGTTAAGTACATCACATCTGGTCCCGTCGTGACCTTGGCxxxxxxxxxxxxxxxGGGTATTGTAGCTGCTGCTCGTAAGCTGATTGGTGCTACAAATCCTCTGCAAGCTGAACCTGGTACCATTCGAGGCGATCTTGCAATTCAAGTTGGGAGGAATGTTGTTCATGGGAGTGATAGCCAGGAAAACGGACAACGTGAAGTAGCTCTATGGTTCAAAGATGGCGAACTTTGTGAATGGACACAGGAGATAACACCTTGGCTGAGGGAATAGCGTGTTCAAATGAGATATGACTCTCAAAATTTTCCCCAATTCTTACAACAGTGTATGC

Fln Alignment:

uagpf_mira_rep_c77161___FTLKGLKLFQCPKELAEEHYRDLKSKPFFPKLVKYITSGPVVTLAxxxxxGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDSQENGQREVALWFKDGELCEWTQEITPWLRE
D5AEB8________________FTLKGLKLFQCPTELAEEHYRDLKSKSFFPKLVKYITSGPVVCMAxxxxxGIVAAARKLIGATNPLQAEPGTIRGDLAIQVGRNVVHGSDSQENGQREVALWFKDGELCEWTQEITPWLRE

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
176		33	66		1.0
179		11	33		1.0
180	88		11		0.923646
183		22		77	0.999999
184		37		62	1.0
185			75	25	1.0
186			12	87	0.992554
188	62		25	12	1.0
189		11	88		0.923646
190		87		12	0.992554
191		12		87	0.992554
192	11		77		0.968132
193		62		37	1.0
194		25	12	62	1.0
195	25	12	62		1.0
196	12	87			0.992554
202	87	12			0.992554
203			87	12	0.992554
206		50	50		1.0
303		50	50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain