SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53223

Length: 631 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene53223

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25715	9/10

Source	Descriptions	Term	Type	Identity
AutoFact	Heat shock protein 90-1 n=9 Tax=rosids RepID=HS901_ARATH	-	-	94%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	48%
Blast2go	heat shock protein 81-1	-	-	98%

Source	GOs	Term	Type	Identity
Blast2go	response to arsenic-containing substance	GO:0046685	Biological Process	98%
Blast2go	response to heat	GO:0009408	Biological Process	98%
Blast2go	defense response to bacterium, incompatible interaction	GO:0009816	Biological Process	98%
Blast2go	protein binding	GO:0005515	Molecular Function	98%
Blast2go	plasma membrane	GO:0005886	Cellular Component	98%
Blast2go	cell wall	GO:0005618	Cellular Component	98%
Blast2go	cytosol	GO:0005829	Cellular Component	98%

Source	InterPros	Term	Type	Identity
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Late embryogenesis abundant protein, LEA-18	IPR018930	-	-

Full-Lengther Next Prediction

SNPs (tot: 31)

Position	A %	C %	G %	T %	Probability
97		40	60		1.0
99			40	60	1.0
100	40	60			1.0
117		50	50		1.0
119	40	60			1.0
120			60	40	1.0
162		80		20	0.995498
203		16	83		0.994515
205	83			16	0.994515
206	83	16			0.994515
209	83		16		0.994515
211		16	83		0.994515
214		80		20	0.995493
215	80		20		0.995493
216	80		20		0.995493
219	80		20		0.995493
220	80			20	0.995493
223		20		80	0.995493
225	80	20			0.995493
251	90	10			0.903175
252	90		10		0.903175
254		10	90		0.903175
256	90			10	0.903175
257		90	10		0.903175
259	90	10			0.903175
262			88	11	0.923564
263			11	88	0.923564
265	88	11			0.923564
266	88			11	0.923564
269	88	11			0.923564
273		11		88	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain