SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53209

Length: 644 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene uagpf_v2_unigene53209 (antisense)

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene5829	14/15

Source	Descriptions	Term	Type	Identity
AutoFact	xyloglucan endotransglycosylase/hydrolase precursor XTH-39 [Populus tremula]	-	-	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	probable xyloglucan endotransglucosylase hydrolase protein 28-like	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Xyloglucan:xyloglucosyl transferase.	EC:2.4.1.207	-	0.0	75%
Blast2go	Hydrolases, Glycosylases, Glycosidases, i.e. enzymes hydrolyzing O- and S-glycosyl compounds.	EC:3.2.1.-	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Ascorbate and aldarate metabolism	00053	75%
Blast2go	Ubiquinone and other terpenoid-quinone biosynthesis	00130	75%
Blast2go	Amino sugar and nucleotide sugar metabolism	00520	75%
Blast2go	Glycosaminoglycan degradation	00531	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	phloem or xylem histogenesis	GO:0010087	Biological Process	75%
Blast2go	cellular glucan metabolic process	GO:0006073	Biological Process	75%
Blast2go	xyloglucan:xyloglucosyl transferase activity	GO:0016762	Molecular Function	75%
Blast2go	hydrolase activity, hydrolyzing O-glycosyl compounds	GO:0004553	Molecular Function	75%
Blast2go	cell wall	GO:0005618	Cellular Component	75%
Blast2go	apoplast	GO:0048046	Cellular Component	75%

Source	InterPros	Term	Type	Identity
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, family 16	IPR000757	-	-
Sma3	Xyloglucan endotransglucosylase/hydrolase	IPR016455	-	-
Sma3	Xyloglucan endo-transglycosylase, C-terminal	IPR010713	-	-

Full-Lengther Next Prediction

SNPs (tot: 47)

Position	A %	C %	G %	T %	Probability
288	12		87		0.992554
459	87			12	0.992554
460		87	12		0.992554
463	87		12		0.992554
464		87		12	0.992554
465		87	12		0.992554
467		12	87		0.992554
473	12	87			0.992554
474			11	88	0.92373
476		88		11	0.92373
481	88		11		0.92373
482	11			88	0.92373
484	88		11		0.92373
510		83		16	0.994512
511		83	16		0.994512
513		83	16		0.994512
514	83			16	0.994512
516	16	83			0.994512
518	16	83			0.994512
519	83		16		0.994512
520	83	16			0.994512
524	85		14		0.993541
525	85		14		0.993541
526	85			14	0.993541
527	85	14			0.993541
528	83			16	0.994512
529		14		85	0.993534
530		42	57		1.0
531	50			50	1.0
532		14	42	42	1.0
533			14	85	0.993535
534		50	50		1.0
536	50	50			1.0
539	50	50			1.0
540	50	50			1.0
541	50		50		1.0
545			50	50	1.0
549	66	16			0.988813
550		50		50	1.0
551			83	16	0.994514
552	83			16	0.994514
553		50		16	1.0
566		33	66		0.997467
567		33		66	0.997467
569	66			33	0.997476
573	66	33			0.997467
575		33	66		0.997467

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain