SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53154

Length: 352 nt

UniGene Fasta

>uagpf_v2_unigene53154
CGTCGTGACCTTGGCTGTCACTCAGGATCCAAGGTTGAAAGGAGACTATCCACCTAAAGCAGTGGCTAAGCTGGCAGCAGTTGCTGCCTTGTGTGTGCAGTATGAAGCTGATTTTCGTGCAAACATGAGTATTATTGTAAAGGCTCTTCGACCTCTATTGAATACACAATCAAGTCCTGCTGGTGGGAACGCAGCTGTGTAATCTGATGTATACCTCAAATTATGTCTTATGAGAAGGAAATCAAGATAGCAAATGCATACAATTGGACATGGCAATTCAAAATTGCAGGCACCTGCTGAGTCTTCAGGATATGCAAATATGATGTCTACTGTGTTGCTTTCTATTAGGTTG

Ace file of the UniGene uagpf_v2_unigene53154

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene68830	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase-domain containing protein [Arabidopsis thaliana] emb\|CAB71882.1\| serine/threonine protein kinase-like protein [Arabidopsis thaliana] gb\|AAQ65161.1\| At3g62220 [Arabidopsis thaliana] dbj\|BAF01981.1\| serine/threonine protein kinase like protei	-	-	1.0e-08	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	87%
Blast2go	pto kinase interactor 1	-	-	3.15387e-14	88%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein kinase activity	GO:0004672	Molecular Function	3.15387e-14	88%

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Tyrosine-protein kinase, active site	IPR008266	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NVM5

Fln msg: your sequence is shorter than subject: 67 - 362

Fln protein: VVTLAVTQDPRLKGDYPPKAVAKLAAVAALCVQYEADFRANMSIIVKALRPLLNTQSSPAGGNAAV*

Protein Length: 68

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGATCCAAGGTTGAAAGGAGACTATCCACCTAAAGCAGTGGCTAAGCTGGCAGCAGTTGCTGCCTTGTGTGTGCAGTATGAAGCTGATTTTCGTGCAAACATGAGTATTATTGTAAAGGCTCTTCGACCTCTATTGAATACACAATCAAGTCCTGCTGGTGGGAACGCAGCTGTGTAA___TCTGATGTATACCTCAAATTATGTCTTATGAGAAGGAAATCAAGATAGCAAATGCATACAATTGGACATGGCAATTCAAAATTGCAGGCACCTGCTGAGTCTTCAGGATATGCAAATATGATGTCTACTGTGTTGCTTTCTATTAGGTTG

Fln Alignment:

uagpf_mira_rep_c76210___DPRLKGDYXXXXXXXXXXXXXXCVQYEADFRANMSIIVKALRPLLNTQSSPAGGNAAV
A9NVM5________________DPRLKGDYPPKAVAKMAAVAALCVQYEADFRANMSIIVKALRPLLNAQTASAGGSPAV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain