SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53140

Length: 243 nt

UniGene Fasta

>uagpf_v2_unigene53140
CGTCGTGACCTTGGCTGTCACTCAATCTCTGAAAATTCCGCAGGCTGATGGTGTTAATGACCGTCTTGACCTTGCTGTTGCCGATGAAGGTTACAATGAAGCAACAGATCAGGAGAAACAAGCTTTAAACGATGTTGCCACTTCGAAAGTGTCAGAGGATGAGGAGCCTTTAAATGATGATGATGATGATCCAGATGACTTAGATCAAAATAGTGTCACGGACCAAGAATAGATGGAAATGTA

Ace file of the UniGene uagpf_v2_unigene53140

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17724	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transcription initiation factor TFIIA large subunit [Arabidopsis thaliana] gb\|AAL11553.1\|AF424559_1 At1g07470/F22G5_13 [Arabidopsis thaliana] gb\|AAK64164.1\| putative transcription factor IIA large subunit [Arabidopsis thaliana] gb\|AAK83596.1\| At1g07470/F2	-	-	3.0e-10	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	transcription factor transcription initiation factor	-	-	0.0	95%

Source	GOs	Term	Type	Identity
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	95%
Blast2go	gene expression	GO:0010467	Biological Process	95%
Blast2go	primary metabolic process	GO:0044238	Biological Process	95%

Source	InterPros	Term	Type	Identity
Sma3	Transcription factor IIA, alpha/beta subunit	IPR004855	-	-
Sma3	Transcription factor IIA, beta-barrel	IPR009088	-	-
Sma3	Transcription factor IIA, alpha subunit, N-terminal	IPR013028	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NX18

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 40 aas, your sequence is shorter than subject: 77 - 398

Fln protein: VVTLAVTQSLKIPQADGVNDRLDLAVADEGYNEATDQEKQALNDVATSKVSEDEEPLNDDDDDPDDLDQNSVTDQE*

Protein Length: 78

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTCTGAAAATTCCGCAGGCTGATGGTGTTAATGACCGTCTTGACCTTGCTGTTGCCGATGAAGGTTACAATGAAGCAACAGATCAGGAGAAACAAGCTTTAAACGATGTTGCCACTTCGAAAGTGTCAGAGGATGAGGAGCCTTTAAATGATGATGATGATGATCCAGATGACTTAGATCAAAATAGTGTCACGGACCAAGAATAGATGGAAATGTA

Fln Alignment:

uagpf_mira_rep_c76113___SLKIPQADGVNDRLDLAVADEGYNEATDQEKQALNDVATSKVS
A9NX18________________SLEIPQVDGVNDNLDSTVADEGYIEATDQEQQALNDVATSKVS

SSRs (tot: 1)

Start position	End position	Sequence	Length
174	190	ATG ATG ATG ATG ATG AT	17

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain