SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53138

Length: 240 nt

UniGene Fasta

>uagpf_v2_unigene53138
CGTCGTGACCTTGGCTGTCACTCAATTATTCCCATGTTTAATTTCGCAAAGAAGCTTGCCGTCGTGGGCTTTGTTGTCACGTTCGTTAATACAGAATCTTGCCATGCCAACATCATCAATGCCCATAACGGCGAGGACCCTGTGATCTCCTTTGCCAGGAGCTCGGGCCTCGACATCCGCTCCGCTCAGGTTGCCGATGGACTGCCCGTGGAATTTGACAGATCGTTGAATCATGACGAG

Ace file of the UniGene uagpf_v2_unigene53138

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene22855	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	UDP-glycosyltransferase-like protein [Arabidopsis thaliana] sp\|Q9SJL0.1\|U86A1_ARATH RecName: Full=UDP-glycosyltransferase 86A1 gb\|AAD31582.1\| putative glucosyltransferase [Arabidopsis thaliana] gb\|AAL06924.1\| At2g36970/T1J8.15 [Arabidopsis thaliana] gb\|AA	-	-	46%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	72%
Blast2go	udp-glycosyltransferase-like protein	-	-	64%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Phosphoglycerate kinase	IPR001576	-	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	-
Sma3	tRNA (guanine-N-7) methyltransferase	IPR003358	-	-
Sma3	Phosphoglycerate kinase, N-terminal	IPR015824	-	-
Sma3	Phosphoglycerate kinase, C-terminal	IPR015901	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNU7

Fln msg: Distance to subject end: 394 aas, your sequence is shorter than subject: 80 - 491

Fln protein: RRDLGCHSIIPMFNFAKKLAVVGFVVTFVNTESCHANIINAHNGEDPVISFARSSGLDIRSAQVADGLPVEFDRSLNHDE

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTATTCCCATGTTTAATTTCGCAAAGAAGCTTGCCGTCGTGGGCTTTGTTGTCACGTTCGTTAATACAGAATCTTGCCATGCCAACATCATCAATGCCCATAACGGCGAGGACCCTGTGATCTCCTTTGCCAGGAGCTCGGGCCTCGACATCCGCTCCGCTCAGGTTGCCGATGGACTGCCCGTGGAATTTGACAGATCGTTGAATCATGACGAG

Fln Alignment:

uagpf_mira_rep_c76101___IIPMFNFAKKLAVVGFVVTFVNTESCHANIINAHNGEDPVISFARSSGLDIRSAQVADGLPVEFDRSLNHDE
B8LNU7________________ITPMFNFAKKLAAKGVTVTFVNTEACYANITKARNGEDP-FSHAQSLGLDIRSAQISDGLPLEFDRSLNAEE

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain