SustainPineDB

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Assembly info
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SNPs
SSRs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene53041

Length: 179 nt

UniGene Fasta

>uagpf_v2_unigene53041
CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCTTGATTGGAAACATCAAATTCTCCTCACAGATCTTCGGGATGTGCTCCACATTAGCAGCGAGGAGCATGCAAAGGAGCTGAGACGCATAACCTCTACTGAATAGAGCTAAGAATAGCCTGATAATATTTTAA

Ace file of the UniGene uagpf_v2_unigene53041

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene79811	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ENT domain containing protein	-	-	2.0e-06	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXU1

Fln msg: your sequence is shorter than subject: 50 - 225

Fln protein: VVTLAVTHVVTLAVTLDWKHQILLTDLRDVLHISSEEHAKELRRITSTE*

Protein Length: 51

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCTTGATTGGAAACATCAAATTCTCCTCACAGATCTTCGGGATGTGCTCCACATTAGCAGCGAGGAGCATGCAAAGGAGCTGAGACGCATAACCTCTACTGAATAG___AGCTAAGAATAGCCTGATAATATTTTAA

Fln Alignment:

uagpf_mira_rep_c75337___DWKHQILLTDLRDVLHISSEEHAKELRRITS
A9NXU1________________NWKLETLLTDLREVLHINNEEHANELRCITS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
33		66		33	0.997471
39	33	66			0.997464
40	33			66	0.997464
41	33		66		0.997464
42	33			66	0.997464

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain