SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52950

Length: 427 nt

UniGene Fasta

>uagpf_v2_unigene52950
CGTCGTGACCTTGGCTGTCACTCAGTTTTAGTTTTTGACGAGTGTCTTTTTAGGTGGGGTGTTAGGGGAATTGCTCACCGGATTTTGATTTTCTGGTCTTTTTATGTGCGTGGCTCGTTTAGTTTGATACTGAACATTCAGGAATTGAAGCTTCTTCACAAGGATTCGGATTTTGATTTGTTTCAGAAGGGCTCTTTCAAATTAAGTAAGATGGATCACTACTACCAAGATGACTTTGATTATTTCGTGGATAATGACGAGATGGTTGATTTTGATGGTGACGTCGAAAATGATGTACGCACCCGGCGCAGGAGTGATATAGACTCAGATTCTGAAAATGATTTCGATTCAGACAAAAGGTCATCTGACACAACAGCTGTTCAAGCCAGGAGAGGAAAAGATATTCAGGGTATTCCATGGAATCGAT

Ace file of the UniGene uagpf_v2_unigene52950

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene64007	4/4

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9RJH4_RICCO	-	-	1.4013e-45	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Blast2go	protein	-	-	0.0	68%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3		IPR015706	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1F5

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 72 - 137

Fln protein: MDHYYQDDFDYFVDNDEMVDFDGDVENDVRTRRRSDIDSDSENDFDSDKRSSDTTAVQARRGKDIQGIPWNR

Protein Length: 73

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTTAGTTTTTGACGAGTGTCTTTTTAGGTGGGGTGTTAGGGGAATTGCTCACCGGATTTTGATTTTCTGGTCTTTTTATGTGCGTGGCTCGTTTAGTTTGATACTGAACATTCAGGAATTGAAGCTTCTTCACAAGGATTCGGATTTTGATTTGTTTCAGAAGGGCTCTTTCAAATTAAGTAAG_-_ATGGATCACTACTACCAAGATGACTTTGATTATTTCGTGGATAATGACGAGATGGTTGATTTTGATGGTGACGTCGAAAATGATGTACGCACCCGGCGCAGGAGTGATATAGACTCAGATTCTGAAAATGATTTCGATTCAGACAAAAGGTCATCTGACACAACAGCTGTTCAAGCCAGGAGAGGAAAAGATATTCAGGGTATTCCATGGAATCGAT

Fln Alignment:

uagpf_mira_rep_c74816___MDHYYQDDFDYFVDNDEMVDFDGDVENDVRTXXXXXXXXXXENDFDSDKRSSDTTAVQARRGKDIQGIPWNR
A9P1F5________________MDNYYQDDFDYLVDDYEMADFEDDVEDDVRIRRRSDVDSDPENEFDSNKKSPDTTAVEARRGKDIQGIPWDR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain