SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52620

Length: 652 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene52620

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene21066	34/37

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chain t, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome pdb\|3IZ5\|UU Chain u, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Tr	-	-	1.0e-17	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	60s acidic ribosomal protein p1	-	-	1.95579e-29	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ribosomal protein 60S	IPR001813	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 45)

Position	A %	C %	G %	T %	Probability
131	87		12		0.992555
132			87	12	0.992555
133	87	12			0.992555
135		87		12	0.992555
140			87	12	0.992555
141		85		14	0.993533
148	85	14			0.993533
149	14		85		0.993533
151			85	14	0.993533
198	88		11		0.923564
199			88	11	0.923564
200	88	11			0.923564
205		11		88	0.923564
208			11	88	0.923564
217		11	88		0.923569
218			88	11	0.923569
219		11	88		0.923569
220	11		88		0.923564
235		10		90	0.90298
236			10	90	0.90298
242	90	10			0.90298
243		10	90		0.90298
244	90			10	0.90298
247			10	90	0.90298
400	82	11	5		0.999919
401	82		11	5	0.999919
402	82	5		11	0.999919
403	88	11			0.999952
405	70			17	1.0
406	82	5	11		0.999919
409	88	11			0.999952
414	88	11			0.999952
415	88			11	0.999952
417	86			13	0.999973
423	11	70	17		1.0
425		11		88	0.999937
426			16	83	1.0
432		11		88	0.999937
443		10	85		0.999793
444	10	5	80	5	0.99967
445	85	15			1.0
455	4	8	87		0.999414
469	91		8		0.999766
470		8		91	0.999766
475		8	91		0.999807

SSRs (tot: 3)

Start position	End position	Sequence	Length
431	443	GGT GGT GGT GGT G	13
473	485	GGC GGC GGC GGC G	13
485	497	GCT GCT GCT GCT G	13

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain