SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52565

Length: 240 nt

UniGene Fasta

>uagpf_v2_unigene52565
CGTCGTGACCTTGGCTGTCACTCAAAAATGTTTCATCTTCTGCAAAGCAGGCACCACCAGCCTCTAACAAGGCTGTTGGTGCACAAGCAACAGGAGCAGTGACAGAGGAAGAAGTGCGGACTGCTTTACGGCAAATGGCTCCAGTCACAACCAAGGAACTTGTAGCAAAATTTCATCCCAGAATTAAGACCCTGGATGACAAGTCATCATTTGCTGCTATCTTGAAGAAGATTTCTCGCA

Ace file of the UniGene uagpf_v2_unigene52565

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene11710	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative transcription initiation factor [Oryza sativa Japonica Group] gb\|ABB46979.1\| mutant TFIIF-alpha, putative, expressed [Oryza sativa Japonica Group]	-	-	2.0e-32	36%
FL-Next	Isoform 2 of Transcription initiation factor IIF subunit alpha OS=Arabidopsis thaliana GN=RAP74	-	-	0.0	46%
Blast2go	transcription initiation factor iif subunit alpha	-	-	7.42688e-44	60%

Source	GOs	Term	Type	e value	Identity
Blast2go	primary metabolic process	GO:0044238	Biological Process	7.42688e-44	60%
Blast2go	cellular macromolecule biosynthetic process	GO:0034645	Biological Process	7.42688e-44	60%
Blast2go	gene expression	GO:0010467	Biological Process	7.42688e-44	60%
Blast2go	protein C-terminus binding	GO:0008022	Molecular Function	7.42688e-44	60%
Blast2go	chloroplast	GO:0009507	Cellular Component	7.42688e-44	60%
Blast2go	nucleus	GO:0005634	Cellular Component	7.42688e-44	60%

Source	InterPros	Term	Type	Identity
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Transcription initiation factor IIF, alpha subunit	IPR008851	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9SU25-2

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 16 aas, your sequence is shorter than subject: 79 - 543

Fln protein: S*PWLSLKNVSSSAKQAPPASNKAVGAQATGAVTEEEVRTALRQMAPVTTKELVAKFHPRIKTLDDKSSFAAILKKISR

Protein Length: 80

Fln nts: CGTCGTGACCTTGGCTGTCACTCAAAAATGTTTCATCTTCTGCAAAGCAGGCACCACCAGCCTCTAACAAGGCTGTTGGTGCACAAGCAACAGGAGCAGTGACAGAGGAAGAAGTGCGGACTGCTTTACGGCAAATGGCTCCAGTCACAACCAAGGAACTTGTAGCAAAATTTCATCCCAGAATTAAGACCCTGGATGACAAGTCATCATTTGCTGCTATCTTGAAGAAGATTTCTCGCA

Fln Alignment:

uagpf_mira_rep_c72094___LSLKNVSSSAKQAPPASNKAVGAQA-TGAVTEEEVRTALRQMAPVTTKELVAKFHPRIKTLDDKSSFAAILKKISR
Q9SU25-2______________VSKSNTPTKAVKAEPASAPASSSSAATGPVTEDEIRAVLMEKKQVTTQDLVSRFKARLKTKEDKNAFANILRKISK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain