SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52438

Length: 228 nt

UniGene Fasta

>uagpf_v2_unigene52438
CGTCGTGACCTTGGCTGTCACTCATATTCTGTTTCAGCATTTCTTTATAAACACCCACCCAAGGAGCAAATTCCTTGGAGTCTTATCTTACCCGCAACTGACCAAAGTTCAGCCGTTCCTGCTGGGGTGCCTGCATTACCTCCGGCAAATTATCTTCCACAAGGAGATTCACTGTTTGCACATCAAAATGTAGGTGCTCCAATTCTTGGTTATGCCTCACATTTATCT

Ace file of the UniGene uagpf_v2_unigene52438

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14619	2/3
SustainPine v2.0	sp_v2.0_unigene26004	1/3

Source	Descriptions	Term	Type	Identity
AutoFact	RNA-binding KH domain-containing protein [Arabidopsis thaliana] dbj\|BAB08264.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK64022.1\| unknown protein [Arabidopsis thaliana] gb\|AAM44907.1\| unknown protein [Arabidopsis thaliana] gb\|AED95351.1\| RNA-b	-	-	33%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	kh domain-containing protein at4g18375-like	-	-	62%

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3		IPR018111	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPZ5

Fln msg: Distance to subject end: 157 aas, your sequence is shorter than subject: 76 - 435

Fln protein: RRDLGCHSYSVSAFLYKHPPKEQIPWSLILPATDQSSAVPAGVPALPPANYLPQGDSLFAHQNVGAPILGYASHLS

Protein Length: 77

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTCTGTTTCAGCATTTCTTTATAAACACCCACCCAAGGAGCAAATTCCTTGGAGTCTTATCTTACCCGCAACTGACCAAAGTTCAGCCGTTCCTGCTGGGGTGCCTGCATTACCTCCGGCAAATTATCTTCCACAAGGAGATTCACTGTTTGCACATCAAAATGTAGGTGCTCCAATTCTTGGTTATGCCTCACATTTATCT

Fln Alignment:

uagpf_mira_rep_c71222___YSVSAFLYKHPPKEQIPWSLILPATDQSSXXXXXXXXXXXXNYLPQGDSLFAHQNVGAPILGYASHL
B8LPZ5________________YAVSAFLFKHPPKEQIPWSVILPETNQSSLPPSGVPTFPPANYLPQGDSLFGHHNLSAPILGYASRL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain