SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52425

Length: 242 nt

UniGene Fasta

>uagpf_v2_unigene52425
CGTCGTGACCTTGGCTGTCACTCAATGAATGAACAGGTGGTGAGCTGTTTGCTTTATGGTTTTAAGCTGCATGAGACATGCTCTGTTGAAGCAATTGCCGATCTAATTATTAAAAGTACAACAGAAAAGCAAAGGAAGGAGTTAAATGGAGGTTTAGTAGGCCCTATGCTAGTCAATGCTCGAGAGAACCTGGATCTCAGGCTTGACCTTGATTGTTGTGATGTAGAAAAATCTTGTCACTA

Ace file of the UniGene uagpf_v2_unigene52425

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene14366	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	Protein cbxX, chromosomal, putative n=1 Tax=Ricinus communis RepID=B9RKQ5_RICCO	-	-	73%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Blast2go	protein	-	-	83%

Source	ECs	Term	Type	e value	Identity
Blast2go	Adenosinetriphosphatase.	EC:3.6.1.3	-	0.0	83%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Purine metabolism	00230		0.0	83%

Source	GOs	Term	Type	Identity
Blast2go	protein metabolic process	GO:0019538	Biological Process	83%
Blast2go	ATPase activity	GO:0016887	Molecular Function	83%
Blast2go	ATP binding	GO:0005524	Molecular Function	83%
Blast2go	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	83%
Blast2go	chloroplast	GO:0009507	Cellular Component	83%

Source	InterPros	Term	Type	Identity
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	CbxX/CfqX	IPR000641	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWX5

Fln msg: STOP codon was not found. Distance to subject end: 14 aas, your sequence is shorter than subject: 80 - 484

Fln protein: RRDLGCHSMNEQVVSCLLYGFKLHETCSVEAIADLIIKSTTEKQRKELNGGLVGPMLVNARENLDLRLDLDCCDVEKSCH

Protein Length: 81

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGAATGAACAGGTGGTGAGCTGTTTGCTTTATGGTTTTAAGCTGCATGAGACATGCTCTGTTGAAGCAATTGCCGATCTAATTATTAAAAGTACAACAGAAAAGCAAAGGAAGGAGTTAAATGGAGGTTTAGTAGGCCCTATGCTAGTCAATGCTCGAGAGAACCTGGATCTCAGGCTTGACCTTGATTGTTGTGATGTAGAAAAATCTTGTCACTA

Fln Alignment:

uagpf_mira_rep_c71167___MNEQVVSCLLYGFKLHETCSVEAIADLIIKSTTEKQRKELNGGLVGPMLVNAREN
A9NWX5________________MNEQVESSLLYGFKLHETCSVKAIADLMIKNTTEKQRKELNGGLVGPMLVNAREN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain