SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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GOs
ECs
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52380

Length: 264 nt

UniGene Fasta

>uagpf_v2_unigene52380
CGTCGTGACCTTGGCTGTCACTCATTGTTATTGTCAATTTATCAGTCAAAATCTGATACTGCTTTTACTCCACAGGATAACTACCTTATAGACTGTGGATCAAAGAGTAACATCACAGTGGGTAGAAGGATCTTCACTGCAGATACCCCCTCATATTTGTTGATTTCCACCAATGAAGAAATCTTTGCTAACACCACAACTTCCAATCTACAGGTTCCTTCTGGTATCTATTTGACAGCTCGAGTGTTTACTCAGCAGTCATCC

Ace file of the UniGene uagpf_v2_unigene52380

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene12403	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	receptor-like protein kinase THESEUS 1 [Arabidopsis thaliana] sp\|Q9LK35.1\|THE1_ARATH RecName: Full=Receptor-like protein kinase THESEUS 1; Flags: Precursor dbj\|BAA98098.1\| receptor-protein kinase-like protein [Arabidopsis thaliana] gb\|AED96490.1\| receptor	-	-	2.0e-27	46%
FL-Next	sp=Receptor-like protein kinase THESEUS 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	46%
Blast2go	receptor-like protein kinase herk 1-like	-	-	9.60887e-36	65%

Source	GOs	Term	Type	e value	Identity
Blast2go	protein autophosphorylation	GO:0046777	Biological Process	9.60887e-36	65%
Blast2go	regulation of unidimensional cell growth	GO:0051510	Biological Process	9.60887e-36	65%
Blast2go	post-embryonic development	GO:0009791	Biological Process	9.60887e-36	65%
Blast2go	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	9.60887e-36	65%
Blast2go	protein kinase activity	GO:0004672	Molecular Function	9.60887e-36	65%
Blast2go	plasma membrane	GO:0005886	Cellular Component	9.60887e-36	65%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: Q9LK35

Fln msg: Distance to subject end: 763 aas, atg_distance in limit (1-15): atg_distance = 4, W2: There is no M at the beginning, your sequence is shorter than subject: 88 - 855

Fln protein: RRDLGCHSLLLSIYQSKSDTAFTPQDNYLIDCGSKSNITVGRRIFTADTPSYLLISTNEEIFANTTTSNLQVPSGIYLTARVFTQQSS

Protein Length: 89

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTGTTATTGTCAATTTATCAGTCAAAATCTGATACTGCTTTTACTCCACAGGATAACTACCTTATAGACTGTGGATCAAAGAGTAACATCACAGTGGGTAGAAGGATCTTCACTGCAGATACCCCCTCATATTTGTTGATTTCCACCAATGAAGAAATCTTTGCTAACACCACAACTTCCAATCTACAGGTTCCTTCTGGTATCTATTTGACAGCTCGAGTGTTTACTCAGCAGTCATCC

Fln Alignment:

uagpf_mira_rep_c70881___LSIYQSKSDTA-FTPQDNYLIDCGSKSNITVGRRIFTADT-PSYLLISTNEEIFANTTTSNLQVPSGIYLTARVFTQQSS
Q9LK35________________LSCYTTTTSSALFNPPDNYLISCGSSQNITFQNRIFVPDSLHSSLVLKIGNSSVATSTTSNNSTNS-IYQTARVFSSLAS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain