SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52366

Length: 304 nt

UniGene Fasta

>uagpf_v2_unigene52366
CGTCGTGACCTTGGCTGTCACTCAATACTGAAGTGTGATTATTGTGTTGCCAAGCTTCAACTTCTCTGCGGATGTGTTAAGGTTATCAGCTTTAGAGAATGCAGAGATAAAGAAGCAGGTACTAGAGTTGCTCGATAAGGGGTTTATATGACCAAGCACATCACCATGTGGATCGCCAATCGTGCTGGTGAGAAAGAAAGAGGGTTTGTGGAGAATGTGTATTGATTGTAGAGCACTAAATAAAATAACGAAGAATCGTTATCCTCTTCCTTGAATAGATGATTTGTAGATCAATTGAAAGATG

Ace file of the UniGene uagpf_v2_unigene52366

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene72040	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative reverse-transcriptase-like protein n=1 Tax=Arabidopsis thaliana RepID=Q9T0B7_ARATH	-	-	4.0e-16	60%
FL-Next	tr=Putative uncharacterized protein; Asparagus officinalis (Garden asparagus).	-	-	0.0	67%
Blast2go	pol polyprotein	-	-	5.31977e-20	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	5.31977e-20	79%
Blast2go	macromolecule metabolic process	GO:0043170	Biological Process	5.31977e-20	79%
Blast2go	primary metabolic process	GO:0044238	Biological Process	5.31977e-20	79%
Blast2go	binding	GO:0005488	Molecular Function	5.31977e-20	79%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: tr_plants

Fln subject: Q2AA41

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 245 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 81 - 335

Fln protein: SVIIVLPSFNFSADVLRLSALENAEIKKQVLELLDKGFI*PSTSPCGSPIVLVRKKEGLWRMCIDCRALNKITKNRYPLP*

Protein Length: 82

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATACTGAAGTGTGATTATTGTGTTGCCAAGCTTCAACTTCTCTGCGGATGTGTTAAGGTTATCAGCTTTAGAGAATGCAGAGATAAAGAAGCAGGTACTAGAGTTGCTCGATAAGGGGTTTATATGACCAAGCACATCACCATGTGGATCGCCAATCGTGCTGGTGAGAAAGAAAGAGGGTTTGTGGAGAATGTGTATTGATTGTAGAGCACTAAATAAAATAACGAAGAATCGTTATCCTCTTCCTTGAATAGATGATTTGTAGATCAATTGAAAGATG

Fln Alignment:

uagpf_mira_rep_c70811___RLSALENAEIKKQVLELLDKGFI*PSTSPCGSPIVLVRKKEGLWRMCIDCRALNKIT-KNRYPLP*IDDL
Q2AA41________________RTSVQESEEIKKQVQELLEMGVIVPSCSPCGSSVLLVLKKDGGWLMCMDYRALNKITIKDRYPLPRIDDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain