SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52325

Length: 277 nt

UniGene Fasta

>uagpf_v2_unigene52325
CGTCGTGACCTTGGCTGTCACTCAGTCATTGTTAAGAAGGGAGAAAATGATCTTCCGGGTCTGACGGACACTGAAAAACGTCGGATTGGGTGTCCTCAAAGGGCATCGAAAATCAGAAAATTGTTCAATCTTTCCAAAGAGGATGATGTTAGGAAATATGTCAACACATACCGTCGGACTTTTCAGTCTAAATCAGGTAAGACGCGGAGCAAAGCTCCAAAGATTCAGAGGCTTGTAACACCATTGACTCTGCAAAGGAAGCGTGCTAGAATTGCAG

Ace file of the UniGene uagpf_v2_unigene52325

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene17195	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	40S ribosomal protein S6 n=7 Tax=Spermatophyta RepID=RS6_ASPOF	-	-	78%
FL-Next	sp=40S ribosomal protein S6; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Blast2go	protein	-	-	95%

Source	GOs	Term	Type	Identity
Blast2go	defense response to bacterium	GO:0042742	Biological Process	95%
Blast2go	growth	GO:0040007	Biological Process	95%
Blast2go	nucleolus	GO:0005730	Cellular Component	95%
Blast2go	cytosolic small ribosomal subunit	GO:0022627	Cellular Component	95%
Blast2go	chloroplast	GO:0009507	Cellular Component	95%
Blast2go	plasma membrane	GO:0005886	Cellular Component	95%

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein S6, eukaryotic	IPR014401	-	-
Sma3	Ribosomal protein S6e	IPR001377	-	-
Sma3	Ribosomal protein S6e, conserved site	IPR018282	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNX7

Fln msg: Distance to subject end: 52 aas, your sequence is shorter than subject: 92 - 249

Fln protein: RRDLGCHSVIVKKGENDLPGLTDTEKRRIGCPQRASKIRKLFNLSKEDDVRKYVNTYRRTFQSKSGKTRSKAPKIQRLVTPLTLQRKRARIA

Protein Length: 93

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCATTGTTAAGAAGGGAGAAAATGATCTTCCGGGTCTGACGGACACTGAAAAACGTCGGATTGGGTGTCCTCAAAGGGCATCGAAAATCAGAAAATTGTTCAATCTTTCCAAAGAGGATGATGTTAGGAAATATGTCAACACATACCGTCGGACTTTTCAGTCTAAATCAGGTAAGACGCGGAGCAAAGCTCCAAAGATTCAGAGGCTTGTAACACCATTGACTCTGCAAAGGAAGCGTGCTAGAATTGCAG

Fln Alignment:

uagpf_mira_rep_c70560___VIVKKGENDLPGLTDTEKRRIGCPQRASKIRKLFNLSKEDDVRKYVNTYRRTFQSKSGKTRSKAPKIQRLVTPLTLQRKRARIA
A9NNX7________________VIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFQSKSGKTRSKAPKIQRLVTPLTLQRKRARIA

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
148		33		66	0.997458
150	66			33	0.997458
151		33		66	0.997458
154			33	66	0.997458
156		33	66		0.997458
157		33	66		0.997458
158	66			33	0.997459

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain