SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene52082

Length: 467 nt

UniGene Fasta

>uagpf_v2_unigene52082
CGTCGTGACCTTGGCTGTCACTCAATGTTTGGTCTAGAAGGCCAGCTGGAGAACCCAAGATCAAGCTGGCAGCTTGTATTTGTCGTCGTGACCTTGGCTGTCACTCACTTGGGGATGATGCCTGTGGGAGGAGTTTGTCAATAATGTTCGATTTATTAAGATACTCTCTCCTCCAGAAGTGCAGCAGATGAGTCAGGAAGATATGGAGTTTTGGAGTTCCATTCCAACTCAGCAGCAGACAAGCAGTAGTTCAGAAGACTGTGTAGCTAGAAATTCTTCTCGCAACATCAGTTCAGTTCTCACATCGACTGGATCACTGGAGTATTAAGTGTAGTTCAATTGTACTATATCACCAGTTGTGTTGTGTCTTTAAAGGGGGGTCTAAAAAATGAGATGTACTTCAATTCATAACTCTTAGGTATGCCCCATAACATGTTTGTCCAGGATATCTAAATGATGAAGTGGTA

Ace file of the UniGene uagpf_v2_unigene52082

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene18361	5/5

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 6/8 n=1 Tax=Ginkgo biloba RepID=E1UHX7_GINBI	-	-	64%
FL-Next	sp=Auxin response factor 17; Oryza sativa subsp. japonica (Rice).	-	-	75%
Blast2go	auxin response factor 6-like	-	-	62%

Source	GOs	Term	Type	e value	Identity
Blast2go	flower development	GO:0009908	Biological Process	0.0	62%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	0.0	62%

Source	InterPros	Term	Type	Identity
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q653U3

Fln msg: Separated hits, possible frame ERROR between 84 and 125, your sequence is shorter than subject: 110 - 917

Fln protein: RRDLGCHSMFGLEGQLENPRSSWQLVFxxxxxxxxxxxxxxxWEEFVNNVRFIKILSPPEVQQMSQEDMEFWSSIPTQQQTSSSSEDCVARNSSRNISSVLTSTGSLEY*

Protein Length: 111

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATGTTTGGTCTAGAAGGCCAGCTGGAGAACCCAAGATCAAGCTGGCAGCTTGTATTTGTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGTGGGAGGAGTTTGTCAATAATGTTCGATTTATTAAGATACTCTCTCCTCCAGAAGTGCAGCAGATGAGTCAGGAAGATATGGAGTTTTGGAGTTCCATTCCAACTCAGCAGCAGACAAGCAGTAGTTCAGAAGACTGTGTAGCTAGAAATTCTTCTCGCAACATCAGTTCAGTTCTCACATCGACTGGATCACTGGAGTATTAAGTGTAGTTCAATTGTACTATATCACCAGTTGTGTTGTGTCTTTAAAGGGGGGTCTAAAAAATGAGATGTACTTCAATTCATAACTCTTAGGTATGCCCCATAACATGTTTGTCCAGGATATCTAAATGATGAAGTGGTA

Fln Alignment:

uagpf_mira_rep_c68928___RRDLGCHSMFGLEGQLENP-RSSWQLVFVxxxxxxxxxxxxxxWEEFVNNVRFIKILSPPEVQQMSQEDMEFWXXXXXXXXXXXXXEDCVARNSSRNISSVLTSTGSLEY
Q653U3________________RRELG--RLFGLEGQLENPLRSGWQLVFVxxxxxxxxxxxxxxWQEFVNSVSCIKILSPQEVQQMG-KPFEL-LSSAPGKRLGSSCDDYVSRQESRSLSTGIASVGSVEF

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
84		66		33	0.997476
86	33			66	0.997476
88	33		66		0.997476
89	33			66	0.997476
91	66		33		0.997476
92	33	66			0.997476
93		66	33		0.997476
94	33			66	0.997476
111			40	60	1.0
113		50	50		1.0
115			50	50	1.0
118		40		60	1.0
119		40	60		1.0
120	60			40	1.0
123		60	40		1.0
128		40	60		1.0
129	40		60		1.0
130		40	60		1.0
131	60			40	1.0
132		50	50		1.0
133	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain