SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51951

Length: 577 nt

UniGene Fasta

>uagpf_v2_unigene51951
CGTCGTGACCTTGGCTGTCACTCAATCGACGGCTGTGTGACTGAGACTTGTGGGCCAATCCAGGATCGGACGGTCGTGGTCGTTTGAATGGATTAAAACTCGTCGTGACCTTGGCTGTCACTCAAATCTTGGTGAGGTTTGTAGAGAGAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGGTGTTTTTTTTCTTGGAAAGAAATCGAAGGAATTTAGCCATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTGAAGGCAATATTTAGCTTTACTGTACCAGATCAAAGATCTGGAAAGGTTGAGCTTCAATATCTGCATGATTATGCA

Ace file of the UniGene uagpf_v2_unigene51951

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene9637	6/17
SustainPine v2.0	sp_v2.0_unigene80426	9/17

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Porin n=1 Tax=Prunus armeniaca RepID=Q9XH72_PRUAR	-	-	9.80909e-45	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	porin voltage-dependent anion-selective channel protein	-	-	0.0	82%

Source	InterPros	Term	Type	e value	Identity
Sma3	Porin, eukaryotic type	IPR001925	-	0.0	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NU89

Fln msg: Distance to subject end: 161 aas, your sequence is shorter than subject: 115 - 276

Fln protein: MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYA

Protein Length: 116

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCGACGGCTGTGTGACTGAGACTTGTGGGCCAATCCAGGATCGGACGGTCGTGGTCGTTTGAATGGATTAAAACTCGTCGTGACCTTGGCTGTCACTCAAATCTTGGTGAGGTTTGTAGAGAGAGCTTCTGTCATTTCCTACCGGGCCGGAGCTTCTTCCTTCTTCAGGTGTTTTTTTTCTTGGAAAGAAATCGAAGGAATTTAGCC_-_ATGGGAAAGGGTCCTGGACTGTACTCCGACATTGGAAAGAAGACCAGAGATCTTCTCAACAAGGATTACAATTTCGATCAGAAGTTTAGTTTCACTTCCTACACATCCACTGGACTGGCATTTACATCTACTGGCATTAAGAAAGGAGAGTTTTTTCTGGGAGATCTGAACACTCAGCTGAAGAATAATAACATCACAACTGATATTAAAGTGGATACAAGTTCCAATTTATTTGCAACTGTGACAATTGATGAACCGGCACCAGGTGTGAAGGCAATATTTAGCTTTACTGTACCAGATCAAAGATCTGGAAAGGTTGAGCTTCAATATCTGCATGATTATGCA

Fln Alignment:

uagpf_mira_rep_c67778___MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNITTDIKVDTSSNLFATVTIDEPAPGVKAIFSFTVPDQRSGKVELQYLHDYA
A9NU89________________MGKGPGLYSDIGKKTRDLLNKDYNFDQKFSFTSYTSTGLAFTSTGIKKGEFFLGDLNTQLKNNNVTTDIKVDTSSNLFATVTIDEPAPGLKTILSFTVPDQRSGKVELQYLHDYA

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
101		40		60	1.0
107		40	60		1.0
108	40			60	1.0
112	50			50	1.0
115		50	50		1.0
117			50	50	1.0
119		50		50	1.0
121	50	50			1.0
122			50	50	1.0
129			40	60	1.0
131		40	60		1.0
136		40	60		1.0
137		40	60		1.0
140			40	60	1.0
143		44		55	1.0
145	55			44	1.0
147	55			44	1.0
150		44	55		1.0
152		44	55		1.0
153	55			44	1.0
154		44	55		1.0
155	44	55			1.0
175		11	88		0.999952
177		88		11	0.999952
183		11	88		0.999952
188			11	88	0.999952
189			11	88	0.999952
191		88		11	0.999952
192			11	88	0.999952
195		11		88	0.999952

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain