SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51835

Length: 287 nt

UniGene Fasta

>uagpf_v2_unigene51835
CGTCGTGACCTTGGCTGTCACTCAGCTTTTGTTGGGACTGCCCTTGTAGACATGTACGCCAAATGTGGTAGCATAGAGGAGTCAAGCCTGGCTTTTGATAACCTTACGGAACCTAACCTTGTGTCTTGGAATGCCGTGATTGTAGGATATGCCCTGCATGGGCATGGAAGCAAGGTGCTTGAACTGTTTGATCAGATGCAGGAGTCTGGCATAAATCCTGATGAAATTACGTTTATTGGTGTTCTCTATGCTTGTGCACATATCGGACTAGTAAATCTAGGCTATCA

Ace file of the UniGene uagpf_v2_unigene51835

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene32247	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SIT7.1\|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600 gb\|AAD22682.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEC06244.1\| pentatricopeptide repe	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	54%
Blast2go	at1g74600-like protein	-	-	70%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Plant lipid transfer protein/Par allergen	IPR000528	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Mannose-binding lectin	IPR001229	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Heat shock protein DnaJ, N-terminal	IPR001623	-	-
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3		IPR003612	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Protein of unknown function DUF642	IPR006946	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Protein of unknown function DUF1635	IPR012862	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Plant lipid transfer protein/hydrophobic protein helical domain	IPR013770	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 80 aas, your sequence is shorter than subject: 95 - 232

Fln protein: RRDLGCHSAFVGTALVDMYAKCGSIEESSLAFDNLTEPNLVSWNAVIVGYALHGHGSKVLELFDQMQESGINPDEITFIGVLYACAHIGLVNLGY

Protein Length: 96

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGCTTTTGTTGGGACTGCCCTTGTAGACATGTACGCCAAATGTGGTAGCATAGAGGAGTCAAGCCTGGCTTTTGATAACCTTACGGAACCTAACCTTGTGTCTTGGAATGCCGTGATTGTAGGATATGCCCTGCATGGGCATGGAAGCAAGGTGCTTGAACTGTTTGATCAGATGCAGGAGTCTGGCATAAATCCTGATGAAATTACGTTTATTGGTGTTCTCTATGCTTGTGCACATATCGGACTAGTAAATCTAGGCTATCA

Fln Alignment:

uagpf_mira_rep_c66952___FVGTALVDMYAKCGSIEESSLAFDNLTEPNLVSWNAVIVGYALHGHGSKVLELFDQMQESGINPDEITFIGVLYACAHIGLVNLG
D5AB53________________FVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain