SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51823

Length: 257 nt

UniGene Fasta

>uagpf_v2_unigene51823
CGTCGTGACCTTGGCTGTCACTCATATTTCAAATTGACCTCCTTATCATAGGAAGCCATGGCTATGTCGTGATTTGGCTGTCCTTTTTGGGGAGCGTGAGTAATTATTGTGTTCATTATGCAAAATGCCCTGTTCTGGTCACCAAGAAGCCCTCTTAAGGTTATAGAGGTTGTACCCTAAATAATAACGATGGGTTATTATGGTATGTATTGACATGTAGAGACTTGACTGCGTTTGAAGTTTCTATTTAGTGTGTT

Ace file of the UniGene uagpf_v2_unigene51823

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10035	1/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	adenine nucleotide alpha hydrolases-like protein [Arabidopsis thaliana] gb\|AAO64778.1\| At1g09740 [Arabidopsis thaliana] dbj\|BAF00178.1\| putative ER6 protein [Arabidopsis thaliana] gb\|AEE28487.1\| adenine nucleotide alpha hydrolases-like protein [Arabidopsi	-	-	1.0e-28	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Blast2go	universal stress protein a-like protein	-	-	0.0	75%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to stress	GO:0006950	Biological Process	0.0	75%

Source	InterPros	Term	Type	Identity
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Universal stress protein A	IPR006015	-	-
Sma3	UspA	IPR006016	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMW4

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 52 - 153

Fln protein: S*PWLSLIFQIDLLIIGSHGYVVIWLSFLGSVSNYCVHYAKCPVLVTKKPS*

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCATATTTCAAATTGACCTCCTTATCATAGGAAGCCATGGCTATGTCGTGATTTGGCTGTCCTTTTTGGGGAGCGTGAGTAATTATTGTGTTCATTATGCAAAATGCCCTGTTCTGGTCACCAAGAAGCCCTCTTAA___GGTTATAGAGGTTGTACCCTAAATAATAACGATGGGTTATTATGGTATGTATTGACATGTAGAGACTTGACTGCGTTTGAAGTTTCTATTTAGTGTGTT

Fln Alignment:

uagpf_mira_rep_c66871___QIDLLIIGSHGYVVIWLSFLGSVSNYCVHYAKCPVLVTKKPS
B8LMW4________________QIDLLITGSHGYGMLKRAFLGSVSNYCVQYAKCPVLVTRKPS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain