SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51752

Length: 382 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene51752
GCTCAAGCCAACATCTCAAGGAGAAGAAAATGCCTTGTAAGTGCAAATTGTTAGAACTTAGCATGCAATTTTCCTAGTTCTCTTTTNTAAATTTGGCATTGCACACTGATAATCTTTGCCGTATTTTTTTACAACTCATTGGTGGATAGATTGTGGCACTGAGGCACCACAATTACAAGAATTCACCATCAGAGTTCCGAGTCAACCCTGCAACGACTCTTCTTATGAGCGCAATTGGTCAGTGTTTGAGCACATCCACAGCAAAAAGAGAAATAGACTAGAGCATAAGAGGTTGGAGAAGTTGGTTTCCATCTACTACAACCTTCGAATGTTCACAAAACAAGTGCAACCAAAAGATTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene51752 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene31717	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH	-	-	1.0e-14	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%
Blast2go	hypothetical protein MTR_5g012510 [Medicago truncatula]	-	-	2.2138e-19	69%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5A8W4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 137 aas, your sequence is shorter than subject: 120 - 478

Fln protein: LKPTSQGEENAL*VQIVRT*HAIFLVLFFKFGIAH**SLPYFFTTHWWIDCGTEAPQLQEFTIRVPSQPCNDSSYERNWSVFEHIHSKKRNRLEHKRLEKLVSIYYNLRMFTKQVQPKD*

Protein Length: 121

Fln nts: GCTCAAGCCAACATCTCAAGGAGAAGAAAATGCCTTGTAAGTGCAAATTGTTAGAACTTAGCATGCAATTTTCCTAGTTCTCTTTTtTAAATTTGGCATTGCACACTGATAATCTTTGCCGTATTTTTTTACAACTCATTGGTGGATAGATTGTGGCACTGAGGCACCACAATTACAAGAATTCACCATCAGAGTTCCGAGTCAACCCTGCAACGACTCTTCTTATGAGCGCAATTGGTCAGTGTTTGAGCACATCCACAGCAAAAAGAGAAATAGACTAGAGCATAAGAGGTTGGAGAAGTTGGTTTCCATCTACTACAACCTTCGAATGTTCACAAAACAAGTGCAACCAAAAGATTGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_c66303___WWIDCGTEAPQLQEFTIRVPSQPCNDSSYERNWSVFEHIHSKKRNRLEHKRLEKLVSIYYNLRMFTKQVQPK
D5A8W4________________WWENYGATTPILQKMAIRVLSQTCSSSGCERNWSVFEKIHTKKRNRLDTSCLNDLVYVHYNLRLWVKQLEIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain