SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51667

Length: 230 nt

UniGene Fasta

>uagpf_v2_unigene51667
CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCATTTTGGAGAAATGGAGCGTGATTCAATTCTTGCACATGGAGCAGCCTATTTGCTTCATGACAGACTTCATACCAGTTCTGATTATCACATTGCAGATGTTTGCTCTAAATGTGGGAGTTTATTGTCAACTTTGTCTGCCCCTCAGAAACAAAGAAGCGATGGACTGTCCAGTTTACCATGAGTGGAAACAATGG

Ace file of the UniGene uagpf_v2_unigene51667

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene10832	4/4

Source	Descriptions	Term	Type	Identity
AutoFact	DNA-directed RNA polymerase (Fragment) n=1 Tax=Vitis vinifera RepID=D7TX75_VITVI	-	-	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	55%
Blast2go	dna-directed rna polymerase i subunit rpa2	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	DNA-directed RNA polymerase.	EC:2.7.7.6	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Purine metabolism	00230	75%
Blast2go	Pyrimidine metabolism	00240	75%
Blast2go	Metabolic pathways	01100	75%

Source	GOs	Term	Type	Identity
Blast2go	transcription, DNA-dependent	GO:0006351	Biological Process	75%
Blast2go	DNA-directed RNA polymerase activity	GO:0003899	Molecular Function	75%
Blast2go	binding	GO:0005488	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	DNA-directed RNA polymerase, subunit 2, domain 6	IPR007120	-	-
Sma3	RNA polymerase, beta subunit, conserved site	IPR007121	-	-
Sma3	RNA polymerase Rpb2, domain 7	IPR007641	-	-
Sma3	RNA polymerase Rpb2, domain 2	IPR007642	-	-
Sma3	RNA polymerase, beta subunit, protrusion	IPR007644	-	-
Sma3	RNA polymerase Rpb2, domain 3	IPR007645	-	-
Sma3	RNA polymerase Rpb2, domain 4	IPR007646	-	-
Sma3	RNA polymerase Rpb2, domain 5	IPR007647	-	-
Sma3	RNA polymerase I, Rpa2 specific	IPR009674	-	-
Sma3	DNA-directed RNA polymerase, subunit 2	IPR015712	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ABJ4

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 39 aas, your sequence is shorter than subject: 72 - 135

Fln protein: VVTFVVTLAVTHFGEMERDSILAHGAAYLLHDRLHTSSDYHIADVCSKCGSLLSTLSAPQKQRSDGLSSLP*

Protein Length: 73

Fln nts: CGTCGTGACCTTCGTCGTGACCTTGGCTGTCACTCATTTTGGAGAAATGGAGCGTGATTCAATTCTTGCACATGGAGCAGCCTATTTGCTTCATGACAGACTTCATACCAGTTCTGATTATCACATTGCAGATGTTTGCTCTAAATGTGGGAGTTTATTGTCAACTTTGTCTGCCCCTCAGAAACAAAGAAGCGATGGACTGTCCAGTTTACCATGAGTGGAAACAATGG

Fln Alignment:

uagpf_mira_rep_c65718___FGEMERDSILAHGAAYLLHDRLHTSSDYHIADVCSKCG
D5ABJ4________________FGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCERCG

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
13		75	25		0.996486
15		25		75	0.996486
16		75		25	0.996486
19		25	75		0.996486
29		75	25		0.996474
30			25	75	0.996474
33			25	75	0.996474
34		75	25		0.996474
36	25	75			0.996486
40	75		25		0.99649

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain