SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51640

Length: 354 nt

UniGene Fasta

>uagpf_v2_unigene51640
CGTCGTGACCTTGGCTGTCACTCATGTTAAAGGCTGCCGAGATGTCTATGCTTCATTTGATAAGTATGTTGAGGTTGAACAACTTGATGGTGATAACAAATATCATGCTGAGCAGTATGGACTTCAGGATGCAAGAAAAGGTGTTCTTTTCCTTGGTTTTCCTCCTGTACTACAACTTCAGTTGAAGCAATTTGAATATGATTTCATGCGAGATACAATGGTTAAGATAAATGATCAATATGAATTTCTACTTCACTTGAATTAGATAAATACAATGGAAAATATCTCTCTCCAGATGCGGATAGAAGTGTACGCAATTTATATACTCTTCATAGTGTTTTGGTTCATAGTGGA

Ace file of the UniGene uagpf_v2_unigene51640

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene3528	3/3

Source	Descriptions	Term	Type	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb\|AAK25908.1\|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AAN13185.1\| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AED91040.1\| ubiq	-	-	81%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 12; Arabidopsis thaliana (Mouse-ear cress).	-	-	83%
Blast2go	ubiquitin carboxyl-terminal hydrolase 12	-	-	92%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin thiolesterase.	EC:3.1.2.15	-	0.0	92%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	92%
Blast2go	ubiquitin-specific protease activity	GO:0004843	Molecular Function	92%
Blast2go	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	92%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FPT1

Fln msg: Overlapping hits, possible frame ERROR between 262 and 256, Distance to subject end: 667 aas, your sequence is shorter than subject: 118 - 1116

Fln protein: VVTLAVTHVKGCRDVYASFDKYVEVEQLDGDNKYHAEQYGLQDARKGVLFLGFPPVLQLQLKQFEYDFMRDTMVKINDQYEFLLxxxxDKYNGKYLSPDADRSVRNLYTLHSVLVHSG

Protein Length: 119

Fln nts: CGTCGTGACCTTGGCTGTCACTCATGTTAAAGGCTGCCGAGATGTCTATGCTTCATTTGATAAGTATGTTGAGGTTGAACAACTTGATGGTGATAACAAATATCATGCTGAGCAGTATGGACTTCAGGATGCAAGAAAAGGTGTTCTTTTCCTTGGTTTTCCTCCTGTACTACAACTTCAGTTGAAGCAATTTGAATATGATTTCATGCGAGATACAATGGTTAAGATAAATGATCAATATGAATTTCTACTTxxxxxxxxxxxxGATAAATACAATGGAAAATATCTCTCTCCAGATGCGGATAGAAGTGTACGCAATTTATATACTCTTCATAGTGTTTTGGTTCATAGTGGA

Fln Alignment:

uagpf_mira_rep_c65589___VKGCRDVYASFDKYVEVEQLDGDNKYHAEQYGLQDARKGVLFLGFPPVLQLQLKQFEYDFMRDTMVKINDQYEFLLHxxLDKYNGKYLSPDADRSVRNLYTLHSVLVHSG
Q9FPT1________________VKGCKDVYASFDKYVEVERLEGDNKYHAEGHGLQDAKKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLExxLDREDGKYLSPDADRSVRNLYTLHSVLVHSG

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
74	33		66		0.997464
125	33			66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain