SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51527

Length: 234 nt

UniGene Fasta

>uagpf_v2_unigene51527
TGTGGAAGTGTCTGAGGTTGGCTGTGACTCAAATCTTCCTAAGCCTGACGCTATGGGTGTGAAAAGAGATGTGGATATAGATCGTGGTTCCCCTGCTAAATCTGATACCATTGCAATCTCTATTCCTTATTTGGAATATGTTGACCAAAATATTTGTTCCCCAGGTGAAACCCCTGGAATACGGGGAAAAGCGACTCTGAAACAGATACAACTCCTGGCTTATCATTCTGTACT

Ace file of the UniGene uagpf_v2_unigene51527

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene7680	3/3

Source	Descriptions	Term	Type	e value	Identity
AutoFact	agenet domain-containing protein [Arabidopsis thaliana] gb\|AAY34173.1\| At1g09320 [Arabidopsis thaliana] gb\|AEE28429.1\| agenet domain-containing protein [Arabidopsis thaliana]	-	-	7.0e-21	31%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	52%
Blast2go	rna binding protein	-	-	0.0	60%

Source	InterPros	Term	Type	Identity
Sma3	EMSY N-terminal	IPR005491	-	-
Sma3	Agenet	IPR008395	-	-
Sma3	Tudor-like, plant	IPR014002	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA9

Fln msg: Distance to subject end: 44 aas, your sequence is shorter than subject: 77 - 359

Fln protein: VEVSEVGCDSNLPKPDAMGVKRDVDIDRGSPAKSDTIAISIPYLEYVDQNICSPGETPGIRGKATLKQIQLLAYHSV

Protein Length: 78

Fln nts: TGTGGAAGTGTCTGAGGTTGGCTGTGACTCAAATCTTCCTAAGCCTGACGCTATGGGTGTGAAAAGAGATGTGGATATAGATCGTGGTTCCCCTGCTAAATCTGATACCATTGCAATCTCTATTCCTTATTTGGAATATGTTGACCAAAATATTTGTTCCCCAGGTGAAACCCCTGGAATACGGGGAAAAGCGACTCTGAAACAGATACAACTCCTGGCTTATCATTCTGTACT

Fln Alignment:

uagpf_mira_rep_c64910___VEVSEVGCDSNLPKPDAMGVKRDVDIDRGSPAKSD-TIAISIPYLEYVDQNICSPGETPGIRGKATLKQIQLLAYHSV
B8LQA9________________VDGTETHDEENIPNFHVKVVKRAPLKDLSSPTESENTFTISIPYLEIVDQNICHPGNTSEIHGKVTLKQMYLLAYHFV

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
75		33	66		0.997464
76	66		33		0.997464
78	66	33			0.997464
79			33	66	0.997464
80	66			33	0.997464
83		33		66	0.997464
85			66	33	0.997464
92		66		33	0.997476
94	33	66			0.997476
99	33			66	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain