SustainPineDB

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Assembly info
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Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51418

Length: 358 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene51418
TGCATGATATTAATTTGCATCAAGATGCTCCATTGCCTAACATCGGAATGTACAGTTTGTCCGCTTTAGAGAATGTAGAAATCAAGAAGTAGGTGCAGGAGTTGCTCGAAAAGGGTTCATCAGACCTAGCACATCACCATGTGGGTCTCCAATCATTTTGGTAAGAAAGAAAGATGGCTCGTGGAGAATTTGCATTGATTACCGAGCACTGAACAAGATAACGATAAAAAATTGTTACCCCCTTCCTCGCATAGATGACCTATTAGATCAATTGAAAGAAGTTGTTTATTTTTCCAAGTTAGACTTGCATAGTGGATATCATCAGGTCAGAGTTTGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene51418 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene77467	2/2

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA-directed DNA polymerase (Reverse transcriptase) n=1 Tax=Medicago truncatula RepID=Q2HW78_MEDTR	-	-	5.0e-31	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	47%

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Domain of unknown function DUF834	IPR008552	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3	Peptidase aspartic, catalytic	IPR009007	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3		IPR013084	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3		IPR015706	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWN2

Fln msg: W1: There is no M at the beginning, your sequence is longer than subject: 99 - 66

Fln protein: HRNVQFVRFRECRNQEVGAGVARKGFIRPSTSPCGSPIILVRKKDGSWRICIDYRALNKITIKNCYPLPRIDDLLDQLKEVVYFSKLDLHSGYHQVRV*

Protein Length: 100

Fln nts: TGCATGATATTAATTTGCATCAAGATGCTCCATTGCCTAACATCGGAATGTACAGTTTGTCCGCTTTAGAGAATGTAGAAATCAAGAAGTAGGTGCAGGAGTTGCTCGAAAAGGGTTCATCAGACCTAGCACATCACCATGTGGGTCTCCAATCATTTTGGTAAGAAAGAAAGATGGCTCGTGGAGAATTTGCATTGATTACCGAGCACTGAACAAGATAACGATAAAAAATTGTTACCCCCTTCCTCGCATAGATGACCTATTAGATCAATTGAAAGAAGTTGTTTATTTTTCCAAGTTAGACTTGCATAGTGGATATCATCAGGTCAGAGTTTGA___GTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c64286___SPIILVRKKDGSWRICIDYRALNKITIKNCYPLPRIDDLLDQLKEVVYFSKLDLHSGYHQVRV
A9NWN2________________TPIILVRINDGSYILCNNCRVLNEITIKDKFHISIVDELLDELYGTMYFLELDQKSNYYHIRV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain