SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51373

Length: 505 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>uagpf_v2_unigene51373
ATCAAGGAAAGGCAGATCTAAGTCCAGATTAGGGATAGTGTGATGAAAATGTGGAAAGAAAGGACACCTAAAGAAAGACTGTAGATCTCGGAAGGGAAAAGAAGGAGATGCACAACAAGAAAACAATCATGAAGCAAATGTGACAGGTGAGGTGTTACAAGATGCTTTGATTCTTTCTTTCGAAAATATTACTGATTCCTGGGTGGTAGATTCAGGGGCCTCATTCCATGCCACACCTGATAAGAAATACTTTCATGACTACGTTCAAGGAGATTTTGGACAAGTTCGTCTGGGTGATGATAAACCCTGTAAAATTGTTGGAATGGGTAAGGTTCTTGTAAAACAGCAGTGAAAACCAAGGGCACGAAAGGAGGTAAGGCATGTTCCGGATCTAAAGAAAAATCTGATTTCAACAGGGCAGTTAGGCAGTGAAGGTTGTGTGACAACTTTCAGAGATAAAGCTTGGAAGGTCACCAAAGGATGAGTGACAGCCAAGGTCACGACG

Ace file of the UniGene uagpf_v2_unigene51373 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene2146	2/2

Source	Descriptions	Term	Type	Identity
AutoFact	GK15001 gene product from transcript GK15001-RA	-	-	47%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	33%
Blast2go	hypothetical protein VITISV_037436 [Vitis vinifera]	-	-	58%

Source	GOs	Term	Type	e value	Identity
Blast2go	binding	GO:0005488	Molecular Function	0.0	58%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Enolase	IPR000941	-	-
Sma3	CCAAT-binding transcription factor, subunit B	IPR001289	-	-
Sma3	Ionotropic glutamate receptor	IPR001320	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Dihydrofolate reductase domain	IPR001796	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pleckstrin homology domain	IPR001849	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Germin	IPR001929	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	K+ potassium transporter	IPR003855	-	-
Sma3	Protein of unknown function DUF295	IPR005174	-	-
Sma3	Cupin 1	IPR006045	-	-
Sma3	Dihydrofolate reductase	IPR012259	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Germin, manganese binding site	IPR019780	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: P10978

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 932 aas, your sequence is shorter than subject: 161 - 1328

Fln protein: SRKGRSKSRLGIV**KCGKKGHLKKDCRSRKGKEGDAQQENNHEANVTGEVLQDALILSFENITDSWVVDSGASFHATPDKKYFHDYVQGDFGQVRLGDDKPCKIVGMGKVLVKQQ*KPRARKEVRHVPDLKKNLISTGQLGSEGCVTTFRDKAWKVTKG*

Protein Length: 162

Fln nts: ATCAAGGAAAGGCAGATCTAAGTCCAGATTAGGGATAGTGTGATGAAAATGTGGAAAGAAAGGACACCTAAAGAAAGACTGTAGATCTCGGAAGGGAAAAGAAGGAGATGCACAACAAGAAAACAATCATGAAGCAAATGTGACAGGTGAGGTGTTACAAGATGCTTTGATTCTTTCTTTCGAAAATATTACTGATTCCTGGGTGGTAGATTCAGGGGCCTCATTCCATGCCACACCTGATAAGAAATACTTTCATGACTACGTTCAAGGAGATTTTGGACAAGTTCGTCTGGGTGATGATAAACCCTGTAAAATTGTTGGAATGGGTAAGGTTCTTGTAAAACAGCAGTGAAAACCAAGGGCACGAAAGGAGGTAAGGCATGTTCCGGATCTAAAGAAAAATCTGATTTCAACAGGGCAGTTAGGCAGTGAAGGTTGTGTGACAACTTTCAGAGATAAAGCTTGGAAGGTCACCAAAGGATGAGTGACAGCCAAGGTCACGACG

Fln Alignment:

uagpf_mira_rep_c63934___KGRSKSRLGIVXXXXXXXXXXXKDCRSRKGKEGDAQQENNHEA--------NVTGEVLQDALILSFENITDSWVVDSGASFHATPDKKYFHDYVQGDFGQVRLGDDKPCKIVGMGKVLVKQQ*K-PRARKEVRHVPDLKKNLISTGQLGSEGCVTTF
P10978________________KNRSKSRVRNCYNCNQPGHFKRDCPNPRKGKGETSGQKNDDNTAAMVQNNDNVVLFINEEEECMHLSGPESEWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKDVRHVPDLRMNLISGIALDRDGYESYF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain