SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51184

Length: 675 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene51184

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene25381	6/7

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative Sm protein F [Oryza sativa Japonica Group] dbj\|BAG86709.1\| unnamed protein product [Oryza sativa Japonica Group] gb\|EEE57059.1\| hypothetical protein OsJ_06869 [Oryza sativa Japonica Group]	-	-	2.0e-36	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Blast2go	protein	-	-	0.0	97%

Source	InterPros	Term	Type	e value	Identity
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	0.0	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
224	80	20			0.9955
225	80		20		0.9955
226	80			20	0.9955
229	80	20			0.995498
231	80			20	0.995498
232	75			25	0.996473
235	75		25		0.996473
237			75	25	0.996473
239	75			25	0.996473
240		25	75		0.996473
245	25		75		0.996473
246		80		20	0.995493
287	85	14			0.993535
288	85		14		0.993535
289	85			14	0.993535
297		85		14	0.993535
299		83	16		0.994512
301		16	83		0.994512
302	83			16	0.994512
304	83			16	0.994512
305	83	16			0.994512
306	16		83		0.994512
307		16	83		0.994512
308	83			16	0.994512
309		16	83		0.994512
310	14	85			0.993539

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain