SustainPineDB

Assembly Name: uagpf v2.0

UniGene Name: uagpf_v2_unigene51155

Length: 850 nt

UniGene Fasta

Ace file of the UniGene uagpf_v2_unigene51155

Annotations

Parent Assembly	Parent UniGene	Reads (related/total)
SustainPine v2.0	sp_v2.0_unigene8823	10/11
SustainPine v2.0	sp_v2.0_unigene77164	1/11

Source	Descriptions	Term	Type	Identity
AutoFact	Polygalacturonase, putative n=1 Tax=Ricinus communis RepID=B9RCG6_RICCO	-	-	65%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	88%
Blast2go	probable polygalacturonase-like	-	-	80%

Source	ECs	Term	Type	e value	Identity
Blast2go	Polygalacturonase.	EC:3.2.1.15	-	0.0	80%

Source	KEGGs	Term	Identity
Blast2go	Pentose and glucuronate interconversions	00040	80%
Blast2go	Starch and sucrose metabolism	00500	80%
Blast2go	Metabolic pathways	01100	80%

Source	GOs	Term	Type	Identity
Blast2go	carbohydrate metabolic process	GO:0005975	Biological Process	80%
Blast2go	cellular cell wall organization	GO:0007047	Biological Process	80%
Blast2go	polygalacturonase activity	GO:0004650	Molecular Function	80%
Blast2go	integral to membrane	GO:0016021	Cellular Component	80%

Source	InterPros	Term	Type	Identity
Sma3	Glycoside hydrolase, family 28	IPR000743	-	-
Sma3	Parallel beta-helix repeat	IPR006626	-	-
Sma3	Pectin lyase fold	IPR012334	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LQW0

Fln msg: STOP codon was not found. Distance to subject end: 13 aas, your sequence is shorter than subject: 283 - 472

Fln protein: VVTLAVTQVELMYSTDIIISNLTFLNSPAWNLHPVVTAAISLIKYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGINFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIHAINSEAGIRIKTSPGRGGFVRDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLSNVTITMAKSKNDPWNCTYIHGFSNAVSPQPCSLLQEQPPKGNAVCPSPQKLDTPQ

Protein Length: 284

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTAGAATTGATGTACTCCACTGATATAATAATTTCAAATTTAACTTTCCTAAACTCACCTGCATGGAACTTACACCCAGTCGTGACAGCAGCAATATCACTCATTAAGTATGTGACTATCCTTGCACCACTTGACTCACCAAACACCGATGGAATTGATCCAGATTCCTGTTCATATGTGCGTATCGAGGACTGCTATGTCGTCTCGGGTGATGATATAGTTGCAATAAAGAGTGGCTGGGATGAATATGGAATCAATTTTGGCATGCCCAGTCAACATATTGTCATCCGTCGTCTTGTTGGCATATCGCCTACAAGTGCTATAATTGCACTAGGCAGTGAAATGTCAGGTGGAATACAGGATGTTCGAGCAGAAGATATCCATGCCATCAATTCAGAAGCAGGAATAAGAATAAAGACATCCCCAGGAAGAGGTGGGTTTGTAAGAGATATATTTGTCAATCGAATGACTATGGTGAATATGAAGTGGGCATTTACCATGACAGGGTCGTATGGTTCGCATCCTGATAACAAATATAATCCAGATGCTCTTCCCGTGGTAGAAAGGATTAGCTATAGCAATATAGTGGCAACAAATGTAAGTGTGGCGGGGAAGCTGGAGGGTATTGCTAAAGCTCCATTCAAAGACATTTGTCTGTCAAATGTTACTATTACCATGGCCAAATCAAAAAATGATCCATGGAACTGCACTTATATTCATGGCTTCTCAAATGCTGTATCTCCACAGCCTTGTAGCCTACTACAGGAACAGCCACCAAAGGGGAATGCAGTCTGTCCCAGTCCTCAGAAGCTTGACACTCCACAA

Fln Alignment:

uagpf_mira_rep_c62455___VELMYSTDIIISNLTFLNSPAWNLHPVVTAAISLIKYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGINFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIHAINSEAGIRIKTSPGRGGFVRDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYNPDALPVVERISYSNIVATNVSVAGKLEGIAKAPFKDICLSNVTITM-AKSKNDPWNCTYIHGFSNAVSPQPCSLLQEQPPKGNAVCPSPQKLDTPQ
B8LQW0________________VELMYSKDIIISNLTFLNSPAWNLHPVYSSNI-LIQYVTILAPLDSPNTDGIDPDSCSYVRIEDCYVVSGDDIVAIKSGWDEYGISFGMPSQHIVIRRLVGISPTSAIIALGSEMSGGIQDVRAEDIQAINSETGIRIKTSPGRGGFVKDIFVNRMTMVNMKWAFTMTGSYGSHPDNKYDPNALPAVERISYSNIVATNVSVAGKLDGIANAPFKDICLTNVTITMAAKSKKYPWNCTYIHGLSNAVYPQPCSLLEERPAEGDAFCPSPQELDTTE

SNPs (tot: 32)

Position	A %	C %	G %	T %	Probability
176		25	75		1.0
178	75			25	1.0
179	75	25			1.0
180			25	75	1.0
184		25		75	1.0
187		71		28	1.0
188	71		28		1.0
190	71	28			1.0
192			28	71	1.0
193		71		28	1.0
195	28			71	1.0
196		28	71		1.0
198		28		71	1.0
199	28	71			1.0
321		87	12		0.992555
322	12			87	0.992555
323		12		87	0.992555
324		12	87		0.992555
332	85		14		0.993533
335	14		85		0.993533
344	88			11	0.923646
345	88	11			0.923646
351		11		88	0.923646
352	88			11	0.923646
354	87		12		0.992554
355	87		12		0.992554
356		12		87	0.992554
366		12	87		0.992554
367	12	87			0.992554
439	85			14	0.993533
440	85	14			0.993533
442	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain